nsv3894278
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:312,052
- Description:GRCh37/hg19 16p13.3(chr16:6306086-6618137)x1 AND See cases
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1116 SVs from 78 studies. See in: genome view
Overlapping variant regions from other studies: 1116 SVs from 78 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3894278 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000016.10 | Chr16 | 6,256,085 | 6,568,136 |
| nsv3894278 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000016.9 | Chr16 | 6,306,086 | 6,618,137 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15150350 | copy number loss | Multiple | Multiple | See cases | conflicting data from submitters | ClinVar | RCV000511781.2, VCV000443218.2 | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15150350 | Remapped | Perfect | NC_000016.10:g.(?_ 6256085)_(6568136_ ?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 6,256,085 | 6,568,136 |
| nssv15150350 | Submitted genomic | NC_000016.9:g.(?_6 306086)_(6618137_? )del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 6,306,086 | 6,618,137 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15150350 | GRCh37: NC_000016.9:g.(?_6306086)_(6618137_?)del | copy number loss | see ClinVar for details | See cases | conflicting data from submitters | ClinVar | RCV000511781.2, VCV000443218.2 | 1 |