nsv39
- Organism: Homo sapiens
- Study:nstd1 (Tuzun et al. 2005)
- Variant Type:insertion
- Method Type:Sequencing
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:38,637
- Publication(s):Tuzun et al. 2005
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 284 SVs from 47 studies. See in: genome view
Overlapping variant regions from other studies: 55 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 284 SVs from 47 studies. See in: genome view
Overlapping variant regions from other studies: 10 SVs from 4 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv39 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000008.11 | Chr8 | 129,743,567 | 129,773,153 |
| nsv39 | Remapped | Pass | GRCh38.p12 | PATCHES | Second Pass | NW_019805494.1 | Chr8|NW_01 9805494.1 | 18,890 | 57,526 |
| nsv39 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000008.10 | Chr8 | 130,755,813 | 130,785,399 |
| nsv39 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000008.9 | Chr8 | 130,824,995 | 130,854,581 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv39 | insertion | SAMN00000376 | Sequencing | Paired-end mapping | 297 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv39 | Remapped | Pass | NW_019805494.1:g.( 18890_?)_(?_57526) ins9638 | GRCh38.p12 | Second Pass | NW_019805494.1 | Chr8|NW_01 9805494.1 | 18,890 | 57,526 |
| nssv39 | Remapped | Perfect | NC_000008.11:g.(12 9743567_?)_(?_1297 73153)ins9638 | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 129,743,567 | 129,773,153 |
| nssv39 | Remapped | Perfect | NC_000008.10:g.(13 0755813_?)_(?_1307 85399)ins9638 | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 130,755,813 | 130,785,399 |
| nssv39 | Submitted genomic | NC_000008.9:g.(130 824995_?)_(?_13085 4581)ins9638 | NCBI35 (hg17) | NC_000008.9 | Chr8 | 130,824,995 | 130,854,581 |