nsv3903027
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:29,760,358
- Description:GRCh37/hg19 10q24.33-26.3(chr10:105613040-135427143)x3 AND not provided
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 82722 SVs from 139 studies. See in: genome view
Overlapping variant regions from other studies: 82260 SVs from 139 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3903027 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 103,853,282 | 133,613,639 |
| nsv3903027 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000010.10 | Chr10 | 105,613,040 | 135,427,143 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15162412 | copy number gain | Multiple | Multiple | not provided | Pathogenic | ClinVar | RCV000683290.1, VCV000563801.1 | 3 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15162412 | Remapped | Good | NC_000010.11:g.(?_ 103853282)_(133613 639_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 103,853,282 | 133,613,639 |
| nssv15162412 | Submitted genomic | NC_000010.10:g.(?_ 105613040)_(135427 143_?)dup | GRCh37 (hg19) | NC_000010.10 | Chr10 | 105,613,040 | 135,427,143 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15162412 | GRCh37: NC_000010.10:g.(?_105613040)_(135427143_?)dup | copy number gain | germline | not provided | Pathogenic | ClinVar | RCV000683290.1, VCV000563801.1 | 3 |