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dbVar

Database of genomic structural variation

nsv3903092

Organism: Homo sapiens

Study:nstd102 (Clinical Structural Variants)
Variant Type:copy number variation
Method Type:Multiple
Submitted on:GRCh37

Variant Calls:2
Validation:Not tested
Clinical Assertions: Yes
Region Size:58,184,610

Description:
See descriptions for individual calls in download files

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 220607 SVs from 145 studies. See in: genome view

Remapped(Score: Good):260,912-58,445,521

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv3903092	Remapped	Good	GRCh38.p12	Primary Assembly	First Pass	NC_000019.10	Chr19	260,912	58,445,521
nsv3903092	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000019.9	Chr19	260,912	58,956,888

Variant Call Information

Variant Call ID	Type	Method	Analysis	Subject Phenotype	Clinical Interpretation	Source of Interpretation	ClinVar ID	Copy number
nssv15150638	copy number gain	Multiple	Multiple	See cases	Pathogenic	ClinVar	RCV000511289.2, VCV000443498.2	3
nssv15150782	copy number gain	Multiple	Multiple	See cases	Pathogenic	ClinVar	RCV000512296.2, VCV000443499.2

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15150638	Remapped	Good	NC_000019.10:g.(?_ 260912)_(58445521_ ?)dup	GRCh38.p12	First Pass	NC_000019.10	Chr19	260,912	58,445,521
nssv15150782	Remapped	Good	NC_000019.10:g.(?_ 260912)_(58445521_ ?)dup	GRCh38.p12	First Pass	NC_000019.10	Chr19	260,912	58,445,521
nssv15150638	Submitted genomic		NC_000019.9:g.(?_2 60912)_(58956888_? )dup	GRCh37 (hg19)		NC_000019.9	Chr19	260,912	58,956,888
nssv15150782	Submitted genomic		NC_000019.9:g.(?_2 60912)_(58956888_? )dup	GRCh37 (hg19)		NC_000019.9	Chr19	260,912	58,956,888

No validation data were submitted for this variant

Clinical Assertions

Variant Call ID	HGVS	Type	Allele Origin	Subject Phenotype	Clinical Interpretation	Source of Interpretation	ClinVar ID	Copy number
nssv15150638	GRCh37: NC_000019.9:g.(?_260912)_(58956888_?)dup	copy number gain	not provided	See cases	Pathogenic	ClinVar	RCV000511289.2, VCV000443498.2	3
nssv15150782	GRCh37: NC_000019.9:g.(?_260912)_(58956888_?)dup	copy number gain	not provided	See cases	Pathogenic	ClinVar	RCV000512296.2, VCV000443499.2

No genotype data were submitted for this variant

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