nsv3904388
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:4,393,293
- Description:GRCh37/hg19 12q21.33-22(chr12:91621655-96014946)x1 AND not provided
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 11490 SVs from 104 studies. See in: genome view
Overlapping variant regions from other studies: 11490 SVs from 104 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3904388 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000012.12 | Chr12 | 91,227,878 | 95,621,170 |
| nsv3904388 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000012.11 | Chr12 | 91,621,655 | 96,014,946 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15157357 | copy number loss | Multiple | Multiple | not provided | Uncertain significance | ClinVar | RCV000737994.2, VCV000601358.2 | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15157357 | Remapped | Perfect | NC_000012.12:g.(?_ 91227878)_(9562117 0_?)del | GRCh38.p12 | First Pass | NC_000012.12 | Chr12 | 91,227,878 | 95,621,170 |
| nssv15157357 | Submitted genomic | NC_000012.11:g.(?_ 91621655)_(9601494 6_?)del | GRCh37 (hg19) | NC_000012.11 | Chr12 | 91,621,655 | 96,014,946 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15157357 | GRCh37: NC_000012.11:g.(?_91621655)_(96014946_?)del | copy number loss | de novo | not provided | Uncertain significance | ClinVar | RCV000737994.2, VCV000601358.2 | 1 |