nsv3905271
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:180,081
- Description:GRCh37/hg19 11q13.2(chr11:65906060-66086140)x1 AND not provided
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 638 SVs from 74 studies. See in: genome view
Overlapping variant regions from other studies: 638 SVs from 74 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3905271 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 66,138,589 | 66,318,669 |
| nsv3905271 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000011.9 | Chr11 | 65,906,060 | 66,086,140 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15153839 | copy number loss | Multiple | Multiple | not provided | Uncertain significance | ClinVar | RCV000683313.1, VCV000563824.1 | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15153839 | Remapped | Perfect | NC_000011.10:g.(?_ 66138589)_(6631866 9_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 66,138,589 | 66,318,669 |
| nssv15153839 | Submitted genomic | NC_000011.9:g.(?_6 5906060)_(66086140 _?)del | GRCh37 (hg19) | NC_000011.9 | Chr11 | 65,906,060 | 66,086,140 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15153839 | GRCh37: NC_000011.9:g.(?_65906060)_(66086140_?)del | copy number loss | germline | not provided | Uncertain significance | ClinVar | RCV000683313.1, VCV000563824.1 | 1 |