nsv3959084
- Organism: Homo sapiens
- Study:nstd168 (Levy-Sakin et al. 2019)
- Variant Type:inversion
- Method Type:Optical mapping
- Submitted on:GRCh38 (hg38)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:35,320
- Publication(s):Levy-Sakin et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 476 SVs from 37 studies. See in: genome view
Overlapping variant regions from other studies: 474 SVs from 37 studies. See in: genome view
Overlapping variant regions from other studies: 37 SVs from 14 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3959084 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000023.11 | ChrX | 135,139,384 | 135,174,703 | ||
| nsv3959084 | Remapped | Good | GRCh37.p13 | Primary Assembly | Second Pass | NC_000023.10 | ChrX | 134,273,312 | 134,308,627 |
| nsv3959084 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_004070887.1 | ChrX|NW_00 4070887.1 | 70,528 | 105,847 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv15219342 | inversion | Optical mapping | Optical mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15219342 | Submitted genomic | NC_000023.11:g.(13 5139384_?)_(?_1351 74703)inv | GRCh38 (hg38) | NC_000023.11 | ChrX | 135,139,384 | 135,174,703 | ||
| nssv15219342 | Remapped | Perfect | NW_004070887.1:g.( 70528_?)_(?_105847 )inv | GRCh37.p13 | First Pass | NW_004070887.1 | ChrX|NW_00 4070887.1 | 70,528 | 105,847 |
| nssv15219342 | Remapped | Good | NC_000023.10:g.(13 4273312_?)_(?_1343 08627)inv | GRCh37.p13 | Second Pass | NC_000023.10 | ChrX | 134,273,312 | 134,308,627 |