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dbVar

Database of genomic structural variation

nsv3971556

Organism: Homo sapiens

Study:nstd168 (Levy-Sakin et al. 2019)
Variant Type:translocation
Method Type:Optical mapping
Submitted on:GRCh38 (hg38)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:1

Publication(s):Levy-Sakin et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 315 SVs from 55 studies. See in: genome view

Submitted genomic21,496,651-21,496,651

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop	strand
nsv3971556	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000005.10	Chr5	21,496,651	21,496,651	+
nsv3971556	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000005.10	Chr5	34,193,974	34,193,974	+
nsv3971556	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000005.9	Chr5	21,496,760	21,496,760	+
nsv3971556	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000005.9	Chr5	34,194,079	34,194,079	+

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv15206834	intrachromosomal translocation	Optical mapping	Optical mapping

Variant Call Placement Information

Variant Call ID	Placement Type	Score	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop	strand
nssv15206834	Submitted genomic		GRCh38 (hg38)		NC_000005.10	Chr5	21,496,651	21,496,651	+
nssv15206834	Submitted genomic		GRCh38 (hg38)		NC_000005.10	Chr5	34,193,974	34,193,974	+
nssv15206834	Remapped	Perfect	GRCh37.p13	First Pass	NC_000005.9	Chr5	21,496,760	21,496,760	+
nssv15206834	Remapped	Perfect	GRCh37.p13	First Pass	NC_000005.9	Chr5	34,194,079	34,194,079	+

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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