nsv3971559
- Organism: Homo sapiens
- Study:nstd168 (Levy-Sakin et al. 2019)
- Variant Type:translocation
- Method Type:Optical mapping
- Submitted on:GRCh38 (hg38)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):Levy-Sakin et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 153 SVs from 47 studies. See in: genome view
Overlapping variant regions from other studies: 126 SVs from 26 studies. See in: genome view
Overlapping variant regions from other studies: 153 SVs from 47 studies. See in: genome view
Overlapping variant regions from other studies: 126 SVs from 26 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
---|---|---|---|---|---|---|---|---|---|---|
nsv3971559 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000005.10 | Chr5 | 133,584,802 | 133,584,802 | + | ||
nsv3971559 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000009.12 | Chr9 | 85,362,767 | 85,362,767 | + | ||
nsv3971559 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000005.9 | Chr5 | 132,920,493 | 132,920,493 | + |
nsv3971559 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 87,977,682 | 87,977,682 | + |
Variant Call Information
Variant Call ID | Type | Method | Analysis |
---|---|---|---|
nssv15209326 | interchromosomal translocation | Optical mapping | Optical mapping |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
---|---|---|---|---|---|---|---|---|---|
nssv15209326 | Submitted genomic | GRCh38 (hg38) | NC_000005.10 | Chr5 | 133,584,802 | 133,584,802 | + | ||
nssv15209326 | Submitted genomic | GRCh38 (hg38) | NC_000009.12 | Chr9 | 85,362,767 | 85,362,767 | + | ||
nssv15209326 | Remapped | Perfect | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 132,920,493 | 132,920,493 | + |
nssv15209326 | Remapped | Perfect | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 87,977,682 | 87,977,682 | + |