nsv3971575
- Organism: Homo sapiens
- Study:nstd168 (Levy-Sakin et al. 2019)
- Variant Type:translocation
- Method Type:Optical mapping
- Submitted on:GRCh38 (hg38)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):Levy-Sakin et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 169 SVs from 31 studies. See in: genome view
Overlapping variant regions from other studies: 113 SVs from 23 studies. See in: genome view
Overlapping variant regions from other studies: 169 SVs from 31 studies. See in: genome view
Overlapping variant regions from other studies: 113 SVs from 23 studies. See in: genome view
Overlapping variant regions from other studies: 18 SVs from 7 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
---|---|---|---|---|---|---|---|---|---|---|
nsv3971575 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000015.10 | Chr15 | 33,788,992 | 33,788,992 | + | ||
nsv3971575 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000016.10 | Chr16 | 57,762,220 | 57,762,220 | + | ||
nsv3971575 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000015.9 | Chr15 | 34,081,193 | 34,081,193 | + |
nsv3971575 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | Second Pass | NC_000016.9 | Chr16 | 57,796,132 | 57,796,132 | + |
nsv3971575 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_003871085.1 | Chr16|NW_0 03871085.1 | 22,111 | 22,111 | + |
Variant Call Information
Variant Call ID | Type | Method | Analysis |
---|---|---|---|
nssv15218216 | interchromosomal translocation | Optical mapping | Optical mapping |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
---|---|---|---|---|---|---|---|---|---|
nssv15218216 | Submitted genomic | GRCh38 (hg38) | NC_000015.10 | Chr15 | 33,788,992 | 33,788,992 | + | ||
nssv15218216 | Submitted genomic | GRCh38 (hg38) | NC_000016.10 | Chr16 | 57,762,220 | 57,762,220 | + | ||
nssv15218216 | Remapped | Perfect | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 34,081,193 | 34,081,193 | + |
nssv15218216 | Remapped | Perfect | GRCh37.p13 | First Pass | NW_003871085.1 | Chr16|NW_0 03871085.1 | 22,111 | 22,111 | + |
nssv15218216 | Remapped | Perfect | GRCh37.p13 | Second Pass | NC_000016.9 | Chr16 | 57,796,132 | 57,796,132 | + |