nsv428244

Organism: Homo sapiens

Study:nstd8 (Perry et al. 2008b)
Variant Type:copy number variation
Method Type:BAC aCGH
Submitted on:NCBI36 (hg18)

Variant Calls:7
Validation:Not tested
Clinical Assertions: No
Region Size:143,117

Publication(s):Perry et al. 2008

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 951 SVs from 82 studies. See in: genome view

Remapped(Score: Pass):882,364-1,025,480

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv428244	Remapped	Pass	GRCh38.p12	Primary Assembly	First Pass	NC_000011.10	Chr11	882,364	1,025,480
nsv428244	Remapped	Pass	GRCh38.p12	ALT_REF_LOCI_3	Second Pass	NT_187681.1	Chr11\|NT_1 87681.1	1	99,873
nsv428244	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000011.9	Chr11	882,364	1,061,595
nsv428244	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000011.8	Chr11	872,364	1,051,595

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv452007	copy number loss	HGDP00449	BAC aCGH	Probe signal intensity	126
nssv452009	copy number loss	HGDP00462	BAC aCGH	Probe signal intensity	83
nssv452010	copy number loss	HGDP00463	BAC aCGH	Probe signal intensity	90
nssv452011	copy number loss	HGDP00986	BAC aCGH	Probe signal intensity	82
nssv452012	copy number loss	NA18498	BAC aCGH	Probe signal intensity	97
nssv452013	copy number loss	NA19147	BAC aCGH	Probe signal intensity	75
nssv452014	copy number loss	NA19225	BAC aCGH	Probe signal intensity	71

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv452007	Remapped	Pass	NT_187681.1:g.(?_1 )_(99873_?)del	GRCh38.p12	Second Pass	NT_187681.1	Chr11\|NT_1 87681.1	1	99,873
nssv452009	Remapped	Pass	NT_187681.1:g.(?_1 )_(99873_?)del	GRCh38.p12	Second Pass	NT_187681.1	Chr11\|NT_1 87681.1	1	99,873
nssv452010	Remapped	Pass	NT_187681.1:g.(?_1 )_(99873_?)del	GRCh38.p12	Second Pass	NT_187681.1	Chr11\|NT_1 87681.1	1	99,873
nssv452011	Remapped	Pass	NT_187681.1:g.(?_1 )_(99873_?)del	GRCh38.p12	Second Pass	NT_187681.1	Chr11\|NT_1 87681.1	1	99,873
nssv452012	Remapped	Pass	NT_187681.1:g.(?_1 )_(99873_?)del	GRCh38.p12	Second Pass	NT_187681.1	Chr11\|NT_1 87681.1	1	99,873
nssv452013	Remapped	Pass	NT_187681.1:g.(?_1 )_(99873_?)del	GRCh38.p12	Second Pass	NT_187681.1	Chr11\|NT_1 87681.1	1	99,873
nssv452014	Remapped	Pass	NT_187681.1:g.(?_1 )_(99873_?)del	GRCh38.p12	Second Pass	NT_187681.1	Chr11\|NT_1 87681.1	1	99,873
nssv452007	Remapped	Pass	NC_000011.10:g.(?_ 882364)_(1025480_? )del	GRCh38.p12	First Pass	NC_000011.10	Chr11	882,364	1,025,480
nssv452009	Remapped	Pass	NC_000011.10:g.(?_ 882364)_(1025480_? )del	GRCh38.p12	First Pass	NC_000011.10	Chr11	882,364	1,025,480
nssv452010	Remapped	Pass	NC_000011.10:g.(?_ 882364)_(1025480_? )del	GRCh38.p12	First Pass	NC_000011.10	Chr11	882,364	1,025,480
nssv452011	Remapped	Pass	NC_000011.10:g.(?_ 882364)_(1025480_? )del	GRCh38.p12	First Pass	NC_000011.10	Chr11	882,364	1,025,480
nssv452012	Remapped	Pass	NC_000011.10:g.(?_ 882364)_(1025480_? )del	GRCh38.p12	First Pass	NC_000011.10	Chr11	882,364	1,025,480
nssv452013	Remapped	Pass	NC_000011.10:g.(?_ 882364)_(1025480_? )del	GRCh38.p12	First Pass	NC_000011.10	Chr11	882,364	1,025,480
nssv452014	Remapped	Pass	NC_000011.10:g.(?_ 882364)_(1025480_? )del	GRCh38.p12	First Pass	NC_000011.10	Chr11	882,364	1,025,480
nssv452007	Remapped	Perfect	NC_000011.9:g.(?_8 82364)_(1061595_?) del	GRCh37.p13	First Pass	NC_000011.9	Chr11	882,364	1,061,595
nssv452009	Remapped	Perfect	NC_000011.9:g.(?_8 82364)_(1061595_?) del	GRCh37.p13	First Pass	NC_000011.9	Chr11	882,364	1,061,595
nssv452010	Remapped	Perfect	NC_000011.9:g.(?_8 82364)_(1061595_?) del	GRCh37.p13	First Pass	NC_000011.9	Chr11	882,364	1,061,595
nssv452011	Remapped	Perfect	NC_000011.9:g.(?_8 82364)_(1061595_?) del	GRCh37.p13	First Pass	NC_000011.9	Chr11	882,364	1,061,595
nssv452012	Remapped	Perfect	NC_000011.9:g.(?_8 82364)_(1061595_?) del	GRCh37.p13	First Pass	NC_000011.9	Chr11	882,364	1,061,595
nssv452013	Remapped	Perfect	NC_000011.9:g.(?_8 82364)_(1061595_?) del	GRCh37.p13	First Pass	NC_000011.9	Chr11	882,364	1,061,595
nssv452014	Remapped	Perfect	NC_000011.9:g.(?_8 82364)_(1061595_?) del	GRCh37.p13	First Pass	NC_000011.9	Chr11	882,364	1,061,595
nssv452007	Submitted genomic		NC_000011.8:g.(?_8 72364)_(1051595_?) del	NCBI36 (hg18)		NC_000011.8	Chr11	872,364	1,051,595
nssv452009	Submitted genomic		NC_000011.8:g.(?_8 72364)_(1051595_?) del	NCBI36 (hg18)		NC_000011.8	Chr11	872,364	1,051,595
nssv452010	Submitted genomic		NC_000011.8:g.(?_8 72364)_(1051595_?) del	NCBI36 (hg18)		NC_000011.8	Chr11	872,364	1,051,595
nssv452011	Submitted genomic		NC_000011.8:g.(?_8 72364)_(1051595_?) del	NCBI36 (hg18)		NC_000011.8	Chr11	872,364	1,051,595
nssv452012	Submitted genomic		NC_000011.8:g.(?_8 72364)_(1051595_?) del	NCBI36 (hg18)		NC_000011.8	Chr11	872,364	1,051,595
nssv452013	Submitted genomic		NC_000011.8:g.(?_8 72364)_(1051595_?) del	NCBI36 (hg18)		NC_000011.8	Chr11	872,364	1,051,595
nssv452014	Submitted genomic		NC_000011.8:g.(?_8 72364)_(1051595_?) del	NCBI36 (hg18)		NC_000011.8	Chr11	872,364	1,051,595

dbVar

Database of genomic structural variation

nsv428244

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant