nsv429558
- Organism: Homo sapiens
- Study:nstd11 (Walter et al. 2009)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:19,861
- Publication(s):Walter et al. 2009
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 769 SVs from 82 studies. See in: genome view
Overlapping variant regions from other studies: 769 SVs from 82 studies. See in: genome view
Overlapping variant regions from other studies: 443 SVs from 29 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv429558 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 5,768,371 | 5,788,231 |
| nsv429558 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000011.9 | Chr11 | 5,789,601 | 5,809,461 |
| nsv429558 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000011.8 | Chr11 | 5,746,177 | 5,766,037 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation |
|---|---|---|---|---|---|---|
| nssv459344 | copy number loss | SNP array | SNP genotyping analysis | Leukemia, Myeloid, Acute | not provided | Submitter |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv459344 | Remapped | Perfect | NC_000011.10:g.(?_ 5768371)_(5788231_ ?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 5,768,371 | 5,788,231 |
| nssv459344 | Remapped | Perfect | NC_000011.9:g.(?_5 789601)_(5809461_? )del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 5,789,601 | 5,809,461 |
| nssv459344 | Submitted genomic | NC_000011.8:g.(?_5 746177)_(5766037_? )del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 5,746,177 | 5,766,037 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation |
|---|---|---|---|---|---|---|
| nssv459344 | NCBI36: NC_000011.8:g.(?_5746177)_(5766037_?)del | copy number loss | somatic | Leukemia, Myeloid, Acute | not provided | Submitter |