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dbVar

Database of genomic structural variation

nsv429606

Organism: Homo sapiens

Study:nstd11 (Walter et al. 2009)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:1
Validation:Not tested
Clinical Assertions: Yes
Region Size:233,416

Publication(s):Walter et al. 2009

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1196 SVs from 98 studies. See in: genome view

Remapped(Score: Perfect):21,594,646-21,828,019

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv429606	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000016.10	Chr16	21,594,646	21,828,019
nsv429606	Remapped	Good	GRCh38.p12	PATCHES	Second Pass	NW_017852933.1	Chr16\|NW_0 17852933.1	1,276,756	1,510,171
nsv429606	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000016.9	Chr16	21,605,967	21,839,340
nsv429606	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000016.8	Chr16	21,513,468	21,746,841

Variant Call Information

Variant Call ID	Type	Method	Analysis	Subject Phenotype	Clinical Interpretation	Source of Interpretation
nssv459392	copy number loss	SNP array	SNP genotyping analysis	Leukemia, Myeloid, Acute	not provided	Submitter

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv459392	Remapped	Good	NW_017852933.1:g.( ?_1276756)_(151017 1_?)del	GRCh38.p12	Second Pass	NW_017852933.1	Chr16\|NW_0 17852933.1	1,276,756	1,510,171
nssv459392	Remapped	Perfect	NC_000016.10:g.(?_ 21594646)_(2182801 9_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	21,594,646	21,828,019
nssv459392	Remapped	Perfect	NC_000016.9:g.(?_2 1605967)_(21839340 _?)del	GRCh37.p13	First Pass	NC_000016.9	Chr16	21,605,967	21,839,340
nssv459392	Submitted genomic		NC_000016.8:g.(?_2 1513468)_(21746841 _?)del	NCBI36 (hg18)		NC_000016.8	Chr16	21,513,468	21,746,841

No validation data were submitted for this variant

Clinical Assertions

Variant Call ID	HGVS	Type	Allele Origin	Subject Phenotype	Clinical Interpretation	Source of Interpretation
nssv459392	NCBI36: NC_000016.8:g.(?_21513468)_(21746841_?)del	copy number loss	somatic	Leukemia, Myeloid, Acute	not provided	Submitter

No genotype data were submitted for this variant

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