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dbVar

Database of genomic structural variation

nsv429611

Organism: Homo sapiens

Study:nstd11 (Walter et al. 2009)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:1
Validation:Not tested
Clinical Assertions: Yes
Region Size:57,082

Publication(s):Walter et al. 2009

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 520 SVs from 37 studies. See in: genome view

Remapped(Score: Perfect):123,985,499-124,042,580

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv429611	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000023.11	ChrX	123,985,499	124,042,580
nsv429611	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000023.10	ChrX	123,119,349	123,176,430
nsv429611	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000023.9	ChrX	122,947,030	123,004,111

Variant Call Information

Variant Call ID	Type	Method	Analysis	Subject Phenotype	Clinical Interpretation	Source of Interpretation
nssv459397	copy number loss	SNP array	SNP genotyping analysis	Leukemia, Myeloid, Acute	not provided	Submitter

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv459397	Remapped	Perfect	NC_000023.11:g.(?_ 123985499)_(124042 580_?)del	GRCh38.p12	First Pass	NC_000023.11	ChrX	123,985,499	124,042,580
nssv459397	Remapped	Perfect	NC_000023.10:g.(?_ 123119349)_(123176 430_?)del	GRCh37.p13	First Pass	NC_000023.10	ChrX	123,119,349	123,176,430
nssv459397	Submitted genomic		NC_000023.9:g.(?_1 22947030)_(1230041 11_?)del	NCBI36 (hg18)		NC_000023.9	ChrX	122,947,030	123,004,111

No validation data were submitted for this variant

Clinical Assertions

Variant Call ID	HGVS	Type	Allele Origin	Subject Phenotype	Clinical Interpretation	Source of Interpretation
nssv459397	NCBI36: NC_000023.9:g.(?_122947030)_(123004111_?)del	copy number loss	somatic	Leukemia, Myeloid, Acute	not provided	Submitter

No genotype data were submitted for this variant

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