nsv429618
- Organism: Homo sapiens
- Study:nstd11 (Walter et al. 2009)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:88,405,054
- Publication(s):Walter et al. 2009
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 239044 SVs from 152 studies. See in: genome view
Overlapping variant regions from other studies: 239001 SVs from 152 studies. See in: genome view
Overlapping variant regions from other studies: 72621 SVs from 44 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nsv429618 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000013.11 | Chr13 | 25,779,197 | 114,184,250 |
nsv429618 | Remapped | Good | GRCh37.p13 | Primary Assembly | First Pass | NC_000013.10 | Chr13 | 26,338,798 | 114,949,725 |
nsv429618 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000013.9 | Chr13 | 25,236,798 | 113,967,827 |
Variant Call Information
Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation |
---|---|---|---|---|---|---|
nssv459404 | copy-neutral loss of heterozygosity | SNP array | SNP genotyping analysis | Leukemia, Myeloid, Acute | not provided | Submitter |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nssv459404 | Remapped | Good | GRCh38.p12 | First Pass | NC_000013.11 | Chr13 | 25,779,197 | 114,184,250 | |
nssv459404 | Remapped | Good | GRCh37.p13 | First Pass | NC_000013.10 | Chr13 | 26,338,798 | 114,949,725 | |
nssv459404 | Submitted genomic | NC_000013.9:g.(?_2 5236798)_(11396782 7_?)del | NCBI36 (hg18) | NC_000013.9 | Chr13 | 25,236,798 | 113,967,827 |
No validation data were submitted for this variant
Clinical Assertions
Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation |
---|---|---|---|---|---|---|
nssv459404 | NCBI36: NC_000013.9:g.(?_25236798)_(113967827_?)del | copy-neutral loss of heterozygosity | somatic | Leukemia, Myeloid, Acute | not provided | Submitter |