Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv429679

Organism: Homo sapiens

Study:nstd11 (Walter et al. 2009)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:1
Validation:Not tested
Clinical Assertions: Yes
Region Size:433,597

Publication(s):Walter et al. 2009

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 2687 SVs from 100 studies. See in: genome view

Remapped(Score: Perfect):15,724,284-16,157,880

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv429679	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000016.10	Chr16	15,724,284	16,157,880
nsv429679	Remapped	Good	GRCh38.p12	ALT_REF_LOCI_1	Second Pass	NT_187607.1	Chr16\|NT_1 87607.1	1,382,295	1,815,809
nsv429679	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000016.9	Chr16	15,818,141	16,251,737
nsv429679	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000016.8	Chr16	15,725,642	16,159,238

Variant Call Information

Variant Call ID	Type	Method	Analysis	Subject Phenotype	Clinical Interpretation	Source of Interpretation
nssv459465	copy number loss	SNP array	SNP genotyping analysis	Leukemia, Myeloid, Acute	not provided	Submitter

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv459465	Remapped	Good	NT_187607.1:g.(?_1 382295)_(1815809_? )del	GRCh38.p12	Second Pass	NT_187607.1	Chr16\|NT_1 87607.1	1,382,295	1,815,809
nssv459465	Remapped	Perfect	NC_000016.10:g.(?_ 15724284)_(1615788 0_?)del	GRCh38.p12	First Pass	NC_000016.10	Chr16	15,724,284	16,157,880
nssv459465	Remapped	Perfect	NC_000016.9:g.(?_1 5818141)_(16251737 _?)del	GRCh37.p13	First Pass	NC_000016.9	Chr16	15,818,141	16,251,737
nssv459465	Submitted genomic		NC_000016.8:g.(?_1 5725642)_(16159238 _?)del	NCBI36 (hg18)		NC_000016.8	Chr16	15,725,642	16,159,238

No validation data were submitted for this variant

Clinical Assertions

Variant Call ID	HGVS	Type	Allele Origin	Subject Phenotype	Clinical Interpretation	Source of Interpretation
nssv459465	NCBI36: NC_000016.8:g.(?_15725642)_(16159238_?)del	copy number loss	somatic	Leukemia, Myeloid, Acute	not provided	Submitter

No genotype data were submitted for this variant

You are here: NCBI