nsv429684
- Organism: Homo sapiens
- Study:nstd11 (Walter et al. 2009)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:966,662
- Publication(s):Walter et al. 2009
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2733 SVs from 85 studies. See in: genome view
Overlapping variant regions from other studies: 2737 SVs from 85 studies. See in: genome view
Overlapping variant regions from other studies: 695 SVs from 26 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv429684 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000018.10 | Chr18 | 28,645,001 | 29,611,662 |
| nsv429684 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000018.9 | Chr18 | 26,224,965 | 27,191,627 |
| nsv429684 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000018.8 | Chr18 | 24,478,963 | 25,445,625 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation |
|---|---|---|---|---|---|---|
| nssv459470 | copy number loss | SNP array | SNP genotyping analysis | Leukemia, Myeloid, Acute | not provided | Submitter |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv459470 | Remapped | Perfect | NC_000018.10:g.(?_ 28645001)_(2961166 2_?)del | GRCh38.p12 | First Pass | NC_000018.10 | Chr18 | 28,645,001 | 29,611,662 |
| nssv459470 | Remapped | Perfect | NC_000018.9:g.(?_2 6224965)_(27191627 _?)del | GRCh37.p13 | First Pass | NC_000018.9 | Chr18 | 26,224,965 | 27,191,627 |
| nssv459470 | Submitted genomic | NC_000018.8:g.(?_2 4478963)_(25445625 _?)del | NCBI36 (hg18) | NC_000018.8 | Chr18 | 24,478,963 | 25,445,625 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation |
|---|---|---|---|---|---|---|
| nssv459470 | NCBI36: NC_000018.8:g.(?_24478963)_(25445625_?)del | copy number loss | somatic | Leukemia, Myeloid, Acute | not provided | Submitter |