nsv429961
- Organism: Homo sapiens
- Study:nstd12 (Marshall et al. 2008)
- Variant Type:copy number variation
- Method Type:Merging, SNP array
- Submitted on:NCBI35 (hg17)
- Variant Calls:4
- Validation:Not tested
- Clinical Assertions: No
- Region Size:198,194
- Publication(s):Marshall et al. 2008
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1385 SVs from 94 studies. See in: genome view
Overlapping variant regions from other studies: 1385 SVs from 94 studies. See in: genome view
Overlapping variant regions from other studies: 211 SVs from 13 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nsv429961 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000008.11 | Chr8 | 136,675,712 | 136,873,905 |
nsv429961 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000008.10 | Chr8 | 137,687,955 | 137,886,148 |
nsv429961 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000008.9 | Chr8 | 137,757,137 | 137,955,330 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
nssv560459 | copy number loss | 76285 | Merging, SNP array | Merging, SNP genotyping analysis | 12 |
nssv560467 | copy number loss | 80860 | Merging, SNP array | Merging, SNP genotyping analysis | 8 |
nssv560471 | copy number loss | 69183 | Merging, SNP array | Merging, SNP genotyping analysis | 11 |
nssv560476 | copy number loss | 77447 | Merging, SNP array | Merging, SNP genotyping analysis | 9 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nssv560459 | Remapped | Perfect | NC_000008.11:g.(?_ 136675712)_(136873 905_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 136,675,712 | 136,873,905 |
nssv560467 | Remapped | Perfect | NC_000008.11:g.(?_ 136675712)_(136873 905_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 136,675,712 | 136,873,905 |
nssv560471 | Remapped | Perfect | NC_000008.11:g.(?_ 136675712)_(136873 905_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 136,675,712 | 136,873,905 |
nssv560476 | Remapped | Perfect | NC_000008.11:g.(?_ 136675712)_(136873 905_?)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 136,675,712 | 136,873,905 |
nssv560459 | Remapped | Perfect | NC_000008.10:g.(?_ 137687955)_(137886 148_?)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 137,687,955 | 137,886,148 |
nssv560467 | Remapped | Perfect | NC_000008.10:g.(?_ 137687955)_(137886 148_?)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 137,687,955 | 137,886,148 |
nssv560471 | Remapped | Perfect | NC_000008.10:g.(?_ 137687955)_(137886 148_?)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 137,687,955 | 137,886,148 |
nssv560476 | Remapped | Perfect | NC_000008.10:g.(?_ 137687955)_(137886 148_?)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 137,687,955 | 137,886,148 |
nssv560459 | Submitted genomic | NC_000008.9:g.(?_1 37757137)_(1379553 30_?)del | NCBI35 (hg17) | NC_000008.9 | Chr8 | 137,757,137 | 137,955,330 | ||
nssv560467 | Submitted genomic | NC_000008.9:g.(?_1 37757137)_(1379553 30_?)del | NCBI35 (hg17) | NC_000008.9 | Chr8 | 137,757,137 | 137,955,330 | ||
nssv560471 | Submitted genomic | NC_000008.9:g.(?_1 37757137)_(1379553 30_?)del | NCBI35 (hg17) | NC_000008.9 | Chr8 | 137,757,137 | 137,955,330 | ||
nssv560476 | Submitted genomic | NC_000008.9:g.(?_1 37757137)_(1379553 30_?)del | NCBI35 (hg17) | NC_000008.9 | Chr8 | 137,757,137 | 137,955,330 |