nsv430266
- Organism: Homo sapiens
- Study:nstd12 (Marshall et al. 2008)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:163,001
- Publication(s):Marshall et al. 2008
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 472 SVs from 58 studies. See in: genome view
Overlapping variant regions from other studies: 463 SVs from 57 studies. See in: genome view
Overlapping variant regions from other studies: 247 SVs from 32 studies. See in: genome view
Overlapping variant regions from other studies: 16 SVs from 6 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv430266 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 115,437,500 | 115,600,500 |
| nsv430266 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | Second Pass | NC_000010.10 | Chr10 | 117,197,010 | 117,360,010 |
| nsv430266 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_004775432.1 | Chr10|NW_0 04775432.1 | 410,964 | 573,964 |
| nsv430266 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000010.8 | Chr10 | 117,187,000 | 117,350,000 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv561160 | copy number gain | 57097 | SNP array | SNP genotyping analysis | 24 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv561160 | Remapped | Perfect | NC_000010.11:g.(?_ 115437500)_(115600 500_?)dup | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 115,437,500 | 115,600,500 |
| nssv561160 | Remapped | Perfect | NW_004775432.1:g.( ?_410964)_(573964_ ?)dup | GRCh37.p13 | First Pass | NW_004775432.1 | Chr10|NW_0 04775432.1 | 410,964 | 573,964 |
| nssv561160 | Remapped | Perfect | NC_000010.10:g.(?_ 117197010)_(117360 010_?)dup | GRCh37.p13 | Second Pass | NC_000010.10 | Chr10 | 117,197,010 | 117,360,010 |
| nssv561160 | Submitted genomic | NC_000010.8:g.(?_1 17187000)_(1173500 00_?)dup | NCBI35 (hg17) | NC_000010.8 | Chr10 | 117,187,000 | 117,350,000 |