nsv430334
- Organism: Homo sapiens
- Study:nstd12 (Marshall et al. 2008)
- Variant Type:copy number variation
- Method Type:Merging, SNP array
- Submitted on:NCBI35 (hg17)
- Variant Calls:6
- Validation:Not tested
- Clinical Assertions: No
- Region Size:21,767
- Publication(s):Marshall et al. 2008
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 863 SVs from 91 studies. See in: genome view
Overlapping variant regions from other studies: 863 SVs from 91 studies. See in: genome view
Overlapping variant regions from other studies: 114 SVs from 11 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nsv430334 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 18,927,673 | 18,949,439 |
nsv430334 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000011.9 | Chr11 | 18,949,220 | 18,970,986 |
nsv430334 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000011.8 | Chr11 | 18,905,796 | 18,927,562 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
nssv561342 | copy number loss | 44307 | SNP array | SNP genotyping analysis | 8 |
nssv561347 | copy number gain | 82058L | SNP array | SNP genotyping analysis | 16 |
nssv561348 | copy number gain | 51504 | SNP array | SNP genotyping analysis | nssv563366, nssv565895, nssv565598 |
nssv561360 | copy number gain | 67941 | SNP array | SNP genotyping analysis | 10 |
nssv561366 | copy number gain | 77046 | SNP array | SNP genotyping analysis | 12 |
nssv561368 | copy number loss | 78063 | Merging, SNP array | Merging, SNP genotyping analysis | 11 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nssv561342 | Remapped | Perfect | NC_000011.10:g.(?_ 18927673)_(1894943 9_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 18,927,673 | 18,949,439 |
nssv561347 | Remapped | Perfect | NC_000011.10:g.(?_ 18927673)_(1894943 9_?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 18,927,673 | 18,949,439 |
nssv561348 | Remapped | Perfect | NC_000011.10:g.(?_ 18927673)_(1894943 9_?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 18,927,673 | 18,949,439 |
nssv561360 | Remapped | Perfect | NC_000011.10:g.(?_ 18927673)_(1894943 9_?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 18,927,673 | 18,949,439 |
nssv561366 | Remapped | Perfect | NC_000011.10:g.(?_ 18927673)_(1894943 9_?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 18,927,673 | 18,949,439 |
nssv561368 | Remapped | Perfect | NC_000011.10:g.(?_ 18927673)_(1894943 9_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 18,927,673 | 18,949,439 |
nssv561342 | Remapped | Perfect | NC_000011.9:g.(?_1 8949220)_(18970986 _?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 18,949,220 | 18,970,986 |
nssv561347 | Remapped | Perfect | NC_000011.9:g.(?_1 8949220)_(18970986 _?)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 18,949,220 | 18,970,986 |
nssv561348 | Remapped | Perfect | NC_000011.9:g.(?_1 8949220)_(18970986 _?)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 18,949,220 | 18,970,986 |
nssv561360 | Remapped | Perfect | NC_000011.9:g.(?_1 8949220)_(18970986 _?)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 18,949,220 | 18,970,986 |
nssv561366 | Remapped | Perfect | NC_000011.9:g.(?_1 8949220)_(18970986 _?)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 18,949,220 | 18,970,986 |
nssv561368 | Remapped | Perfect | NC_000011.9:g.(?_1 8949220)_(18970986 _?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 18,949,220 | 18,970,986 |
nssv561342 | Submitted genomic | NC_000011.8:g.(?_1 8905796)_(18927562 _?)del | NCBI35 (hg17) | NC_000011.8 | Chr11 | 18,905,796 | 18,927,562 | ||
nssv561347 | Submitted genomic | NC_000011.8:g.(?_1 8905796)_(18927562 _?)dup | NCBI35 (hg17) | NC_000011.8 | Chr11 | 18,905,796 | 18,927,562 | ||
nssv561348 | Submitted genomic | NC_000011.8:g.(?_1 8905796)_(18927562 _?)dup | NCBI35 (hg17) | NC_000011.8 | Chr11 | 18,905,796 | 18,927,562 | ||
nssv561360 | Submitted genomic | NC_000011.8:g.(?_1 8905796)_(18927562 _?)dup | NCBI35 (hg17) | NC_000011.8 | Chr11 | 18,905,796 | 18,927,562 | ||
nssv561366 | Submitted genomic | NC_000011.8:g.(?_1 8905796)_(18927562 _?)dup | NCBI35 (hg17) | NC_000011.8 | Chr11 | 18,905,796 | 18,927,562 | ||
nssv561368 | Submitted genomic | NC_000011.8:g.(?_1 8905796)_(18927562 _?)del | NCBI35 (hg17) | NC_000011.8 | Chr11 | 18,905,796 | 18,927,562 |