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dbVar

Database of genomic structural variation

nsv430356

Organism: Homo sapiens

Study:nstd12 (Marshall et al. 2008)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI35 (hg17)

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:11,223

Publication(s):Marshall et al. 2008

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 814 SVs from 87 studies. See in: genome view

Remapped(Score: Perfect):18,928,910-18,940,132

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv430356	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000011.10	Chr11	18,928,910	18,940,132
nsv430356	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000011.9	Chr11	18,950,457	18,961,679
nsv430356	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000011.8	Chr11	18,907,033	18,918,255

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv561372	copy number gain	54581	SNP array	SNP genotyping analysis	12
nssv561373	copy number loss	63168L	SNP array	SNP genotyping analysis	14
nssv561375	copy number gain	47557	SNP array	SNP genotyping analysis	16
nssv561376	copy number gain	29224	SNP array	SNP genotyping analysis	12
nssv561377	copy number gain	53664	SNP array	SNP genotyping analysis	11
nssv561378	copy number loss	66962	SNP array	SNP genotyping analysis	15

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv561372	Remapped	Perfect	NC_000011.10:g.(?_ 18928910)_(1894013 2_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,928,910	18,940,132
nssv561373	Remapped	Perfect	NC_000011.10:g.(?_ 18928910)_(1894013 2_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,928,910	18,940,132
nssv561375	Remapped	Perfect	NC_000011.10:g.(?_ 18928910)_(1894013 2_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,928,910	18,940,132
nssv561376	Remapped	Perfect	NC_000011.10:g.(?_ 18928910)_(1894013 2_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,928,910	18,940,132
nssv561377	Remapped	Perfect	NC_000011.10:g.(?_ 18928910)_(1894013 2_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,928,910	18,940,132
nssv561378	Remapped	Perfect	NC_000011.10:g.(?_ 18928910)_(1894013 2_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,928,910	18,940,132
nssv561372	Remapped	Perfect	NC_000011.9:g.(?_1 8950457)_(18961679 _?)dup	GRCh37.p13	First Pass	NC_000011.9	Chr11	18,950,457	18,961,679
nssv561373	Remapped	Perfect	NC_000011.9:g.(?_1 8950457)_(18961679 _?)del	GRCh37.p13	First Pass	NC_000011.9	Chr11	18,950,457	18,961,679
nssv561375	Remapped	Perfect	NC_000011.9:g.(?_1 8950457)_(18961679 _?)dup	GRCh37.p13	First Pass	NC_000011.9	Chr11	18,950,457	18,961,679
nssv561376	Remapped	Perfect	NC_000011.9:g.(?_1 8950457)_(18961679 _?)dup	GRCh37.p13	First Pass	NC_000011.9	Chr11	18,950,457	18,961,679
nssv561377	Remapped	Perfect	NC_000011.9:g.(?_1 8950457)_(18961679 _?)dup	GRCh37.p13	First Pass	NC_000011.9	Chr11	18,950,457	18,961,679
nssv561378	Remapped	Perfect	NC_000011.9:g.(?_1 8950457)_(18961679 _?)del	GRCh37.p13	First Pass	NC_000011.9	Chr11	18,950,457	18,961,679
nssv561372	Submitted genomic		NC_000011.8:g.(?_1 8907033)_(18918255 _?)dup	NCBI35 (hg17)		NC_000011.8	Chr11	18,907,033	18,918,255
nssv561373	Submitted genomic		NC_000011.8:g.(?_1 8907033)_(18918255 _?)del	NCBI35 (hg17)		NC_000011.8	Chr11	18,907,033	18,918,255
nssv561375	Submitted genomic		NC_000011.8:g.(?_1 8907033)_(18918255 _?)dup	NCBI35 (hg17)		NC_000011.8	Chr11	18,907,033	18,918,255
nssv561376	Submitted genomic		NC_000011.8:g.(?_1 8907033)_(18918255 _?)dup	NCBI35 (hg17)		NC_000011.8	Chr11	18,907,033	18,918,255
nssv561377	Submitted genomic		NC_000011.8:g.(?_1 8907033)_(18918255 _?)dup	NCBI35 (hg17)		NC_000011.8	Chr11	18,907,033	18,918,255
nssv561378	Submitted genomic		NC_000011.8:g.(?_1 8907033)_(18918255 _?)del	NCBI35 (hg17)		NC_000011.8	Chr11	18,907,033	18,918,255

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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