nsv432402
- Organism: Homo sapiens
- Study:nstd12 (Marshall et al. 2008)
- Variant Type:copy number variation
- Method Type:Merging, SNP array
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:190,487
- Publication(s):Marshall et al. 2008
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 697 SVs from 66 studies. See in: genome view
Overlapping variant regions from other studies: 697 SVs from 66 studies. See in: genome view
Overlapping variant regions from other studies: 33 SVs from 6 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv432402 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 18,616,877 | 18,807,363 |
| nsv432402 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 18,658,369 | 18,848,855 |
| nsv432402 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000003.9 | Chr3 | 18,633,373 | 18,823,859 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv565866 | copy number loss | 30193 | Merging, SNP array | Merging, SNP genotyping analysis | 23 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv565866 | Remapped | Perfect | NC_000003.12:g.(?_ 18616877)_(1880736 3_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 18,616,877 | 18,807,363 |
| nssv565866 | Remapped | Perfect | NC_000003.11:g.(?_ 18658369)_(1884885 5_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 18,658,369 | 18,848,855 |
| nssv565866 | Submitted genomic | NC_000003.9:g.(?_1 8633373)_(18823859 _?)del | NCBI35 (hg17) | NC_000003.9 | Chr3 | 18,633,373 | 18,823,859 |