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dbVar

Database of genomic structural variation

nsv432627

Organism: Homo sapiens

Study:nstd12 (Marshall et al. 2008)
Variant Type:copy number variation
Method Type:Merging, SNP array
Submitted on:NCBI35 (hg17)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:298,307

Publication(s):Marshall et al. 2008

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 935 SVs from 74 studies. See in: genome view

Remapped(Score: Perfect):134,002,879-134,301,185

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv432627	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000004.12	Chr4	134,002,879	134,301,185
nsv432627	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000004.11	Chr4	134,924,034	135,222,340
nsv432627	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000004.9	Chr4	135,281,639	135,579,945

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv558911	copy number loss	62249L	Merging, SNP array	Merging, SNP genotyping analysis	7
nssv558920	copy number loss	80022	Merging, SNP array	Merging, SNP genotyping analysis	9

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv558911	Remapped	Perfect	NC_000004.12:g.(?_ 134002879)_(134301 185_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	134,002,879	134,301,185
nssv558920	Remapped	Perfect	NC_000004.12:g.(?_ 134002879)_(134301 185_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	134,002,879	134,301,185
nssv558911	Remapped	Perfect	NC_000004.11:g.(?_ 134924034)_(135222 340_?)del	GRCh37.p13	First Pass	NC_000004.11	Chr4	134,924,034	135,222,340
nssv558920	Remapped	Perfect	NC_000004.11:g.(?_ 134924034)_(135222 340_?)del	GRCh37.p13	First Pass	NC_000004.11	Chr4	134,924,034	135,222,340
nssv558911	Submitted genomic		NC_000004.9:g.(?_1 35281639)_(1355799 45_?)del	NCBI35 (hg17)		NC_000004.9	Chr4	135,281,639	135,579,945
nssv558920	Submitted genomic		NC_000004.9:g.(?_1 35281639)_(1355799 45_?)del	NCBI35 (hg17)		NC_000004.9	Chr4	135,281,639	135,579,945

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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