nsv432628
- Organism: Homo sapiens
- Study:nstd12 (Marshall et al. 2008)
- Variant Type:copy number variation
- Method Type:Merging, SNP array
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:254,362
- Publication(s):Marshall et al. 2008
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 870 SVs from 73 studies. See in: genome view
Overlapping variant regions from other studies: 870 SVs from 73 studies. See in: genome view
Overlapping variant regions from other studies: 74 SVs from 7 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv432628 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 134,002,879 | 134,257,240 |
| nsv432628 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000004.11 | Chr4 | 134,924,034 | 135,178,395 |
| nsv432628 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000004.9 | Chr4 | 135,281,639 | 135,536,000 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv558915 | copy number loss | 58568 | Merging, SNP array | Merging, SNP genotyping analysis | 11 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv558915 | Remapped | Perfect | NC_000004.12:g.(?_ 134002879)_(134257 240_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 134,002,879 | 134,257,240 |
| nssv558915 | Remapped | Perfect | NC_000004.11:g.(?_ 134924034)_(135178 395_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 134,924,034 | 135,178,395 |
| nssv558915 | Submitted genomic | NC_000004.9:g.(?_1 35281639)_(1355360 00_?)del | NCBI35 (hg17) | NC_000004.9 | Chr4 | 135,281,639 | 135,536,000 |