nsv432795
- Organism: Homo sapiens
- Study:nstd12 (Marshall et al. 2008)
- Variant Type:copy number variation
- Method Type:Merging, SNP array
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:221,161
- Publication(s):Marshall et al. 2008
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1374 SVs from 85 studies. See in: genome view
Overlapping variant regions from other studies: 1374 SVs from 85 studies. See in: genome view
Overlapping variant regions from other studies: 127 SVs from 12 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv432795 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 105,142,400 | 105,363,560 |
| nsv432795 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000005.9 | Chr5 | 104,478,101 | 104,699,261 |
| nsv432795 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000005.8 | Chr5 | 104,506,000 | 104,727,160 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv559333 | copy number loss | 47602 | Merging, SNP array | Merging, SNP genotyping analysis | 11 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv559333 | Remapped | Perfect | NC_000005.10:g.(?_ 105142400)_(105363 560_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 105,142,400 | 105,363,560 |
| nssv559333 | Remapped | Perfect | NC_000005.9:g.(?_1 04478101)_(1046992 61_?)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 104,478,101 | 104,699,261 |
| nssv559333 | Submitted genomic | NC_000005.8:g.(?_1 04506000)_(1047271 60_?)del | NCBI35 (hg17) | NC_000005.8 | Chr5 | 104,506,000 | 104,727,160 |