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dbVar

Database of genomic structural variation

nsv433417

Organism: Homo sapiens

Study:nstd14 (Cooper et al. 2008)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI35 (hg17)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:39,118

Publication(s):Cooper et al. 2008

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 379 SVs from 66 studies. See in: genome view

Remapped(Score: Perfect):50,136,389-50,175,506

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv433417	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000011.10	Chr11	50,136,389	50,175,506
nsv433417	Remapped	Pass	GRCh37.p13	Primary Assembly	Second Pass	NC_000011.9	Chr11	50,095,560	50,121,284
nsv433417	Remapped	Pass	GRCh37.p13	PATCHES	First Pass	NW_003571045.1	Chr11\|NW_0 03571045.1	295,280	321,004
nsv433417	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000011.8	Chr11	50,052,136	50,091,253

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv463298	copy number gain	NA12878	SNP array	SNP genotyping analysis	54

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv463298	Remapped	Perfect	NC_000011.10:g.(?_ 50136389)_(5017550 6_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	50,136,389	50,175,506
nssv463298	Remapped	Pass	NW_003571045.1:g.( ?_295280)_(321004_ ?)dup	GRCh37.p13	First Pass	NW_003571045.1	Chr11\|NW_0 03571045.1	295,280	321,004
nssv463298	Remapped	Pass	NC_000011.9:g.(?_5 0095560)_(50121284 _?)dup	GRCh37.p13	Second Pass	NC_000011.9	Chr11	50,095,560	50,121,284
nssv463298	Submitted genomic		NC_000011.8:g.(?_5 0052136)_(50091253 _?)dup	NCBI35 (hg17)		NC_000011.8	Chr11	50,052,136	50,091,253

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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