nsv436124
- Organism: Homo sapiens
- Study:nstd16 (Korbel et al. 2007)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:25,176
- Publication(s):Korbel et al. 2007
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 384 SVs from 72 studies. See in: genome view
Overlapping variant regions from other studies: 249 SVs from 50 studies. See in: genome view
Overlapping variant regions from other studies: 250 SVs from 50 studies. See in: genome view
Overlapping variant regions from other studies: 384 SVs from 72 studies. See in: genome view
Overlapping variant regions from other studies: 153 SVs from 26 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
---|---|---|---|---|---|---|---|---|---|
nsv436124 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 7,789,673 | 7,814,840 |
nsv436124 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NT_187583.1 | Chr11|NT_1 87583.1 | 10,541 | 35,708 |
nsv436124 | Remapped | Good | GRCh38.p12 | PATCHES | Second Pass | NW_011332695.1 | Chr11|NW_0 11332695.1 | 10,541 | 35,716 |
nsv436124 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000011.9 | Chr11 | 7,811,220 | 7,836,387 |
nsv436124 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000011.8 | Chr11 | 7,767,796 | 7,792,963 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
nssv466640 | deletion | SAMN00001583 | Sequencing | Paired-end mapping | 822 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
---|---|---|---|---|---|---|---|---|---|
nssv466640 | Remapped | Perfect | NT_187583.1:g.(105 41_?)_(?_35708)del | GRCh38.p12 | Second Pass | NT_187583.1 | Chr11|NT_1 87583.1 | 10,541 | 35,708 |
nssv466640 | Remapped | Good | NW_011332695.1:g.( 10541_?)_(?_35716) del | GRCh38.p12 | Second Pass | NW_011332695.1 | Chr11|NW_0 11332695.1 | 10,541 | 35,716 |
nssv466640 | Remapped | Perfect | NC_000011.10:g.(77 89673_?)_(?_781484 0)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 7,789,673 | 7,814,840 |
nssv466640 | Remapped | Perfect | NC_000011.9:g.(781 1220_?)_(?_7836387 )del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 7,811,220 | 7,836,387 |
nssv466640 | Submitted genomic | NC_000011.8:g.(776 7796_?)_(?_7792963 )del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 7,767,796 | 7,792,963 |