nsv436195
- Organism: Homo sapiens
- Study:nstd16 (Korbel et al. 2007)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Yes
- Clinical Assertions: No
- Region Size:105,214
- Publication(s):Korbel et al. 2007
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2124 SVs from 98 studies. See in: genome view
Overlapping variant regions from other studies: 2124 SVs from 98 studies. See in: genome view
Overlapping variant regions from other studies: 904 SVs from 33 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv436195 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000015.10 | Chr15 | 24,210,031 | 24,315,244 |
| nsv436195 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000015.9 | Chr15 | 24,455,178 | 24,560,391 |
| nsv436195 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000015.8 | Chr15 | 22,006,271 | 22,111,484 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv465513 | deletion | SAMN00001583 | Sequencing | Paired-end mapping | 822 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv465513 | Remapped | Perfect | NC_000015.10:g.(24 210031_?)_(?_24315 244)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 24,210,031 | 24,315,244 |
| nssv465513 | Remapped | Perfect | NC_000015.9:g.(244 55178_?)_(?_245603 91)del | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 24,455,178 | 24,560,391 |
| nssv465513 | Submitted genomic | NC_000015.8:g.(220 06271_?)_(?_221114 84)del | NCBI36 (hg18) | NC_000015.8 | Chr15 | 22,006,271 | 22,111,484 |
Validation Information
| Variant Call ID | Experiment ID | Sample ID | Method | Analysis | Result |
|---|---|---|---|---|---|
| nssv465513 | 4 | SAMN00001583 | PCR | Manual observation | Pass |