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dbVar

Database of genomic structural variation

nsv4365345

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:33,906

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 365 SVs from 63 studies. See in: genome view

Remapped(Score: Perfect):22,038,937-22,072,842

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4365345	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000004.12	Chr4	22,038,937	22,072,842
nsv4365345	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000004.11	Chr4	22,040,560	22,074,465

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15623264	copy number loss	1-0228-004	SNP array	Genotyping	18
nssv15643857	copy number loss	16-1005-003	SNP array	Genotyping	13
nssv15699326	copy number loss	78142	SNP array	Genotyping	25

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15623264	Remapped	Perfect	NC_000004.12:g.(?_ 22038937)_(2207284 2_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	22,038,937	22,072,842
nssv15643857	Remapped	Perfect	NC_000004.12:g.(?_ 22038937)_(2207284 2_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	22,038,937	22,072,842
nssv15699326	Remapped	Perfect	NC_000004.12:g.(?_ 22038937)_(2207284 2_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	22,038,937	22,072,842
nssv15623264	Submitted genomic		NC_000004.11:g.(?_ 22040560)_(2207446 5_?)del	GRCh37 (hg19)		NC_000004.11	Chr4	22,040,560	22,074,465
nssv15643857	Submitted genomic		NC_000004.11:g.(?_ 22040560)_(2207446 5_?)del	GRCh37 (hg19)		NC_000004.11	Chr4	22,040,560	22,074,465
nssv15699326	Submitted genomic		NC_000004.11:g.(?_ 22040560)_(2207446 5_?)del	GRCh37 (hg19)		NC_000004.11	Chr4	22,040,560	22,074,465

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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