nsv4365395
- Organism: Homo sapiens
- Study:nstd173 (Zarrei et al. 2019)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:11
- Validation:Not tested
- Clinical Assertions: No
- Region Size:43,347
- Publication(s):Zarrei et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 796 SVs from 78 studies. See in: genome view
Overlapping variant regions from other studies: 796 SVs from 78 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4365395 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 97,714,657 | 97,758,003 |
| nsv4365395 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000005.9 | Chr5 | 97,050,361 | 97,093,707 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv15626429 | copy number loss | 1-0439-002 | SNP array | Genotyping | 14 |
| nssv15626447 | copy number loss | 1-0439-003 | SNP array | Genotyping | 18 |
| nssv15628314 | copy number loss | 1-0509-002 | SNP array | Genotyping | 14 |
| nssv15657466 | copy number loss | 3-0533-000 | SNP array | Genotyping | 13 |
| nssv15660519 | copy number loss | 5-0004-003 | SNP array | Genotyping | 24 |
| nssv15662084 | copy number loss | 5-0084-003 | SNP array | Genotyping | 19 |
| nssv15680779 | copy number loss | 225324 | SNP array | Genotyping | 19 |
| nssv15681533 | copy number loss | 227579 | SNP array | Genotyping | 16 |
| nssv15692657 | copy number loss | OCD69-896071 | SNP array | Genotyping | 22 |
| nssv15693734 | copy number loss | 220358 | SNP array | Genotyping | 22 |
| nssv15698561 | copy number loss | 222720 | SNP array | Genotyping | 24 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15626429 | Remapped | Perfect | NC_000005.10:g.(?_ 97714657)_(9775800 3_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 97,714,657 | 97,758,003 |
| nssv15626447 | Remapped | Perfect | NC_000005.10:g.(?_ 97714657)_(9775800 3_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 97,714,657 | 97,758,003 |
| nssv15628314 | Remapped | Perfect | NC_000005.10:g.(?_ 97714657)_(9775800 3_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 97,714,657 | 97,758,003 |
| nssv15657466 | Remapped | Perfect | NC_000005.10:g.(?_ 97714657)_(9775800 3_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 97,714,657 | 97,758,003 |
| nssv15660519 | Remapped | Perfect | NC_000005.10:g.(?_ 97714657)_(9775800 3_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 97,714,657 | 97,758,003 |
| nssv15662084 | Remapped | Perfect | NC_000005.10:g.(?_ 97714657)_(9775800 3_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 97,714,657 | 97,758,003 |
| nssv15680779 | Remapped | Perfect | NC_000005.10:g.(?_ 97714657)_(9775800 3_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 97,714,657 | 97,758,003 |
| nssv15681533 | Remapped | Perfect | NC_000005.10:g.(?_ 97714657)_(9775800 3_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 97,714,657 | 97,758,003 |
| nssv15692657 | Remapped | Perfect | NC_000005.10:g.(?_ 97714657)_(9775800 3_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 97,714,657 | 97,758,003 |
| nssv15693734 | Remapped | Perfect | NC_000005.10:g.(?_ 97714657)_(9775800 3_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 97,714,657 | 97,758,003 |
| nssv15698561 | Remapped | Perfect | NC_000005.10:g.(?_ 97714657)_(9775800 3_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 97,714,657 | 97,758,003 |
| nssv15626429 | Submitted genomic | NC_000005.9:g.(?_9 7050361)_(97093707 _?)del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 97,050,361 | 97,093,707 | ||
| nssv15626447 | Submitted genomic | NC_000005.9:g.(?_9 7050361)_(97093707 _?)del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 97,050,361 | 97,093,707 | ||
| nssv15628314 | Submitted genomic | NC_000005.9:g.(?_9 7050361)_(97093707 _?)del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 97,050,361 | 97,093,707 | ||
| nssv15657466 | Submitted genomic | NC_000005.9:g.(?_9 7050361)_(97093707 _?)del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 97,050,361 | 97,093,707 | ||
| nssv15660519 | Submitted genomic | NC_000005.9:g.(?_9 7050361)_(97093707 _?)del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 97,050,361 | 97,093,707 | ||
| nssv15662084 | Submitted genomic | NC_000005.9:g.(?_9 7050361)_(97093707 _?)del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 97,050,361 | 97,093,707 | ||
| nssv15680779 | Submitted genomic | NC_000005.9:g.(?_9 7050361)_(97093707 _?)del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 97,050,361 | 97,093,707 | ||
| nssv15681533 | Submitted genomic | NC_000005.9:g.(?_9 7050361)_(97093707 _?)del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 97,050,361 | 97,093,707 | ||
| nssv15692657 | Submitted genomic | NC_000005.9:g.(?_9 7050361)_(97093707 _?)del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 97,050,361 | 97,093,707 | ||
| nssv15693734 | Submitted genomic | NC_000005.9:g.(?_9 7050361)_(97093707 _?)del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 97,050,361 | 97,093,707 | ||
| nssv15698561 | Submitted genomic | NC_000005.9:g.(?_9 7050361)_(97093707 _?)del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 97,050,361 | 97,093,707 |