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dbVar

Database of genomic structural variation

nsv4365461

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:20,794

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 792 SVs from 92 studies. See in: genome view

Remapped(Score: Perfect):18,919,635-18,940,428

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4365461	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000011.10	Chr11	18,919,635	18,940,428
nsv4365461	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000011.9	Chr11	18,941,182	18,961,975

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15615255	copy number gain	1-0765-003	SNP array	Genotyping	26
nssv15643814	copy number gain	16-1000-001	SNP array	Genotyping	21
nssv15673513	copy number loss	9-0033-001	SNP array	Genotyping	15

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15615255	Remapped	Perfect	NC_000011.10:g.(?_ 18919635)_(1894042 8_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,635	18,940,428
nssv15643814	Remapped	Perfect	NC_000011.10:g.(?_ 18919635)_(1894042 8_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,635	18,940,428
nssv15673513	Remapped	Perfect	NC_000011.10:g.(?_ 18919635)_(1894042 8_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	18,919,635	18,940,428
nssv15615255	Submitted genomic		NC_000011.9:g.(?_1 8941182)_(18961975 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	18,941,182	18,961,975
nssv15643814	Submitted genomic		NC_000011.9:g.(?_1 8941182)_(18961975 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	18,941,182	18,961,975
nssv15673513	Submitted genomic		NC_000011.9:g.(?_1 8941182)_(18961975 _?)del	GRCh37 (hg19)		NC_000011.9	Chr11	18,941,182	18,961,975

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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