nsv4365532

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:28
Validation:Not tested
Clinical Assertions: No
Region Size:51,881

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 770 SVs from 67 studies. See in: genome view

Remapped(Score: Perfect):68,178,990-68,230,870

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4365532	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000018.10	Chr18	68,178,990	68,230,870
nsv4365532	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000018.9	Chr18	65,846,227	65,898,107

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15612573	copy number loss	1-0698-003	SNP array	Genotyping	23
nssv15616053	copy number loss	1-0144-002	SNP array	Genotyping	15
nssv15616262	copy number loss	1-0144-004	SNP array	Genotyping	25
nssv15618428	copy number loss	1-0873-003	SNP array	Genotyping	23
nssv15618796	copy number loss	1-0888-003	SNP array	Genotyping	21
nssv15627721	copy number loss	1-0534-002	SNP array	Genotyping	23
nssv15627741	copy number loss	1-0534-003	SNP array	Genotyping	16
nssv15628096	copy number loss	1-0534-005	SNP array	Genotyping	21
nssv15628118	copy number loss	1-0534-006	SNP array	Genotyping	19
nssv15631848	copy number loss	10-1104-003	SNP array	Genotyping	23
nssv15632061	copy number loss	10-0009-002	SNP array	Genotyping	21
nssv15632287	copy number loss	10-1104-001	SNP array	Genotyping	16
nssv15632839	copy number loss	10-0009-003	SNP array	Genotyping	25
nssv15633081	copy number loss	10-1104-004	SNP array	Genotyping	21
nssv15636630	copy number loss	13-0135-003	SNP array	Genotyping	21
nssv15637431	copy number loss	13-0095-002	SNP array	Genotyping	22
nssv15638577	copy number loss	13-0095-004	SNP array	Genotyping	24
nssv15642250	copy number loss	16-1003-002	SNP array	Genotyping	24
nssv15644185	copy number loss	16-1003-001	SNP array	Genotyping	22
nssv15645288	copy number loss	2-0129-002	SNP array	Genotyping	19
nssv15645310	copy number loss	2-0129-004	SNP array	Genotyping	21
nssv15651637	copy number loss	2-1528-001	SNP array	Genotyping	22
nssv15661852	copy number loss	4-0042-001	SNP array	Genotyping	16
nssv15661871	copy number loss	4-0042-003	SNP array	Genotyping	15
nssv15663634	copy number loss	5-1006-003	SNP array	Genotyping	19
nssv15686012	copy number loss	OCD176-8961181	SNP array	Genotyping	15
nssv15686052	copy number loss	OCD176-8961183	SNP array	Genotyping	20
nssv15688188	copy number loss	209350	SNP array	Genotyping	25

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15612573	Remapped	Perfect	NC_000018.10:g.(?_ 68178990)_(6823087 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	68,178,990	68,230,870
nssv15616053	Remapped	Perfect	NC_000018.10:g.(?_ 68178990)_(6823087 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	68,178,990	68,230,870
nssv15616262	Remapped	Perfect	NC_000018.10:g.(?_ 68178990)_(6823087 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	68,178,990	68,230,870
nssv15618428	Remapped	Perfect	NC_000018.10:g.(?_ 68178990)_(6823087 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	68,178,990	68,230,870
nssv15618796	Remapped	Perfect	NC_000018.10:g.(?_ 68178990)_(6823087 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	68,178,990	68,230,870
nssv15627721	Remapped	Perfect	NC_000018.10:g.(?_ 68178990)_(6823087 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	68,178,990	68,230,870
nssv15627741	Remapped	Perfect	NC_000018.10:g.(?_ 68178990)_(6823087 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	68,178,990	68,230,870
nssv15628096	Remapped	Perfect	NC_000018.10:g.(?_ 68178990)_(6823087 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	68,178,990	68,230,870
nssv15628118	Remapped	Perfect	NC_000018.10:g.(?_ 68178990)_(6823087 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	68,178,990	68,230,870
nssv15631848	Remapped	Perfect	NC_000018.10:g.(?_ 68178990)_(6823087 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	68,178,990	68,230,870
nssv15632061	Remapped	Perfect	NC_000018.10:g.(?_ 68178990)_(6823087 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	68,178,990	68,230,870
nssv15632287	Remapped	Perfect	NC_000018.10:g.(?_ 68178990)_(6823087 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	68,178,990	68,230,870
nssv15632839	Remapped	Perfect	NC_000018.10:g.(?_ 68178990)_(6823087 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	68,178,990	68,230,870
nssv15633081	Remapped	Perfect	NC_000018.10:g.(?_ 68178990)_(6823087 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	68,178,990	68,230,870
nssv15636630	Remapped	Perfect	NC_000018.10:g.(?_ 68178990)_(6823087 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	68,178,990	68,230,870
nssv15637431	Remapped	Perfect	NC_000018.10:g.(?_ 68178990)_(6823087 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	68,178,990	68,230,870
nssv15638577	Remapped	Perfect	NC_000018.10:g.(?_ 68178990)_(6823087 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	68,178,990	68,230,870
nssv15642250	Remapped	Perfect	NC_000018.10:g.(?_ 68178990)_(6823087 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	68,178,990	68,230,870
nssv15644185	Remapped	Perfect	NC_000018.10:g.(?_ 68178990)_(6823087 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	68,178,990	68,230,870
nssv15645288	Remapped	Perfect	NC_000018.10:g.(?_ 68178990)_(6823087 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	68,178,990	68,230,870
nssv15645310	Remapped	Perfect	NC_000018.10:g.(?_ 68178990)_(6823087 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	68,178,990	68,230,870
nssv15651637	Remapped	Perfect	NC_000018.10:g.(?_ 68178990)_(6823087 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	68,178,990	68,230,870
nssv15661852	Remapped	Perfect	NC_000018.10:g.(?_ 68178990)_(6823087 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	68,178,990	68,230,870
nssv15661871	Remapped	Perfect	NC_000018.10:g.(?_ 68178990)_(6823087 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	68,178,990	68,230,870
nssv15663634	Remapped	Perfect	NC_000018.10:g.(?_ 68178990)_(6823087 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	68,178,990	68,230,870
nssv15686012	Remapped	Perfect	NC_000018.10:g.(?_ 68178990)_(6823087 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	68,178,990	68,230,870
nssv15686052	Remapped	Perfect	NC_000018.10:g.(?_ 68178990)_(6823087 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	68,178,990	68,230,870
nssv15688188	Remapped	Perfect	NC_000018.10:g.(?_ 68178990)_(6823087 0_?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	68,178,990	68,230,870
nssv15612573	Submitted genomic		NC_000018.9:g.(?_6 5846227)_(65898107 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	65,846,227	65,898,107
nssv15616053	Submitted genomic		NC_000018.9:g.(?_6 5846227)_(65898107 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	65,846,227	65,898,107
nssv15616262	Submitted genomic		NC_000018.9:g.(?_6 5846227)_(65898107 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	65,846,227	65,898,107
nssv15618428	Submitted genomic		NC_000018.9:g.(?_6 5846227)_(65898107 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	65,846,227	65,898,107
nssv15618796	Submitted genomic		NC_000018.9:g.(?_6 5846227)_(65898107 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	65,846,227	65,898,107
nssv15627721	Submitted genomic		NC_000018.9:g.(?_6 5846227)_(65898107 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	65,846,227	65,898,107
nssv15627741	Submitted genomic		NC_000018.9:g.(?_6 5846227)_(65898107 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	65,846,227	65,898,107
nssv15628096	Submitted genomic		NC_000018.9:g.(?_6 5846227)_(65898107 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	65,846,227	65,898,107
nssv15628118	Submitted genomic		NC_000018.9:g.(?_6 5846227)_(65898107 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	65,846,227	65,898,107
nssv15631848	Submitted genomic		NC_000018.9:g.(?_6 5846227)_(65898107 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	65,846,227	65,898,107
nssv15632061	Submitted genomic		NC_000018.9:g.(?_6 5846227)_(65898107 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	65,846,227	65,898,107
nssv15632287	Submitted genomic		NC_000018.9:g.(?_6 5846227)_(65898107 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	65,846,227	65,898,107
nssv15632839	Submitted genomic		NC_000018.9:g.(?_6 5846227)_(65898107 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	65,846,227	65,898,107
nssv15633081	Submitted genomic		NC_000018.9:g.(?_6 5846227)_(65898107 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	65,846,227	65,898,107
nssv15636630	Submitted genomic		NC_000018.9:g.(?_6 5846227)_(65898107 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	65,846,227	65,898,107
nssv15637431	Submitted genomic		NC_000018.9:g.(?_6 5846227)_(65898107 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	65,846,227	65,898,107
nssv15638577	Submitted genomic		NC_000018.9:g.(?_6 5846227)_(65898107 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	65,846,227	65,898,107
nssv15642250	Submitted genomic		NC_000018.9:g.(?_6 5846227)_(65898107 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	65,846,227	65,898,107
nssv15644185	Submitted genomic		NC_000018.9:g.(?_6 5846227)_(65898107 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	65,846,227	65,898,107
nssv15645288	Submitted genomic		NC_000018.9:g.(?_6 5846227)_(65898107 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	65,846,227	65,898,107
nssv15645310	Submitted genomic		NC_000018.9:g.(?_6 5846227)_(65898107 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	65,846,227	65,898,107
nssv15651637	Submitted genomic		NC_000018.9:g.(?_6 5846227)_(65898107 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	65,846,227	65,898,107
nssv15661852	Submitted genomic		NC_000018.9:g.(?_6 5846227)_(65898107 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	65,846,227	65,898,107
nssv15661871	Submitted genomic		NC_000018.9:g.(?_6 5846227)_(65898107 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	65,846,227	65,898,107
nssv15663634	Submitted genomic		NC_000018.9:g.(?_6 5846227)_(65898107 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	65,846,227	65,898,107
nssv15686012	Submitted genomic		NC_000018.9:g.(?_6 5846227)_(65898107 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	65,846,227	65,898,107
nssv15686052	Submitted genomic		NC_000018.9:g.(?_6 5846227)_(65898107 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	65,846,227	65,898,107
nssv15688188	Submitted genomic		NC_000018.9:g.(?_6 5846227)_(65898107 _?)del	GRCh37 (hg19)		NC_000018.9	Chr18	65,846,227	65,898,107

dbVar

Database of genomic structural variation

nsv4365532

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant