nsv4365537
- Organism: Homo sapiens
- Study:nstd173 (Zarrei et al. 2019)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:8
- Validation:Not tested
- Clinical Assertions: No
- Region Size:226,506
- Publication(s):Zarrei et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 915 SVs from 75 studies. See in: genome view
Overlapping variant regions from other studies: 1865 SVs from 98 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4365537 | Remapped | Pass | GRCh38.p12 | Primary Assembly | First Pass | NC_000015.10 | Chr15 | 22,358,243 | 22,584,748 |
| nsv4365537 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000015.9 | Chr15 | 23,288,348 | 23,676,512 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv15611848 | copy number loss | 1-0657-003 | SNP array | Genotyping | 21 |
| nssv15616940 | copy number loss | 1-0826-004 | SNP array | Genotyping | 17 |
| nssv15624141 | copy number loss | 1-0261-004 | SNP array | Genotyping | 26 |
| nssv15626121 | copy number loss | 1-0432-002 | SNP array | Genotyping | 17 |
| nssv15645206 | copy number loss | 2-0725-003 | SNP array | Genotyping | 15 |
| nssv15650000 | copy number loss | 2-1425-001 | SNP array | Genotyping | 27 |
| nssv15656348 | copy number loss | 4-0027-001 | SNP array | Genotyping | 22 |
| nssv15659483 | copy number loss | 3-0736-000 | SNP array | Genotyping | 25 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15611848 | Remapped | Pass | NC_000015.10:g.(?_ 22358243)_(2258474 8_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,358,243 | 22,584,748 |
| nssv15616940 | Remapped | Pass | NC_000015.10:g.(?_ 22358243)_(2258474 8_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,358,243 | 22,584,748 |
| nssv15624141 | Remapped | Pass | NC_000015.10:g.(?_ 22358243)_(2258474 8_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,358,243 | 22,584,748 |
| nssv15626121 | Remapped | Pass | NC_000015.10:g.(?_ 22358243)_(2258474 8_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,358,243 | 22,584,748 |
| nssv15645206 | Remapped | Pass | NC_000015.10:g.(?_ 22358243)_(2258474 8_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,358,243 | 22,584,748 |
| nssv15650000 | Remapped | Pass | NC_000015.10:g.(?_ 22358243)_(2258474 8_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,358,243 | 22,584,748 |
| nssv15656348 | Remapped | Pass | NC_000015.10:g.(?_ 22358243)_(2258474 8_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,358,243 | 22,584,748 |
| nssv15659483 | Remapped | Pass | NC_000015.10:g.(?_ 22358243)_(2258474 8_?)del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,358,243 | 22,584,748 |
| nssv15611848 | Submitted genomic | NC_000015.9:g.(?_2 3288348)_(23676512 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 23,288,348 | 23,676,512 | ||
| nssv15616940 | Submitted genomic | NC_000015.9:g.(?_2 3288348)_(23676512 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 23,288,348 | 23,676,512 | ||
| nssv15624141 | Submitted genomic | NC_000015.9:g.(?_2 3288348)_(23676512 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 23,288,348 | 23,676,512 | ||
| nssv15626121 | Submitted genomic | NC_000015.9:g.(?_2 3288348)_(23676512 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 23,288,348 | 23,676,512 | ||
| nssv15645206 | Submitted genomic | NC_000015.9:g.(?_2 3288348)_(23676512 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 23,288,348 | 23,676,512 | ||
| nssv15650000 | Submitted genomic | NC_000015.9:g.(?_2 3288348)_(23676512 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 23,288,348 | 23,676,512 | ||
| nssv15656348 | Submitted genomic | NC_000015.9:g.(?_2 3288348)_(23676512 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 23,288,348 | 23,676,512 | ||
| nssv15659483 | Submitted genomic | NC_000015.9:g.(?_2 3288348)_(23676512 _?)del | GRCh37 (hg19) | NC_000015.9 | Chr15 | 23,288,348 | 23,676,512 |