nsv4366036

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:39
Validation:Not tested
Clinical Assertions: No
Region Size:31,094

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 957 SVs from 85 studies. See in: genome view

Remapped(Score: Perfect):11,068,228-11,099,321

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4366036	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000012.12	Chr12	11,068,228	11,099,321
nsv4366036	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000012.11	Chr12	11,220,827	11,251,920

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15612834	copy number loss	1-0675-001	SNP array	Genotyping	27
nssv15614384	copy number loss	1-0761-003	SNP array	Genotyping	20
nssv15614717	copy number loss	1-0740-003	SNP array	Genotyping	20
nssv15614892	copy number loss	1-0704-005	SNP array	Genotyping	21
nssv15622036	copy number loss	1-0208-002	SNP array	Genotyping	22
nssv15623760	copy number loss	1-0236-005	SNP array	Genotyping	25
nssv15625829	copy number loss	1-0376-003	SNP array	Genotyping	24
nssv15626320	copy number loss	1-0449-001	SNP array	Genotyping	20
nssv15630390	copy number loss	1-0610-003	SNP array	Genotyping	21
nssv15631034	copy number loss	1-0595-001	SNP array	Genotyping	31
nssv15633059	copy number loss	10-1104-003	SNP array	Genotyping	23
nssv15637260	copy number loss	12-8115-003	SNP array	Genotyping	19
nssv15654175	copy number loss	2-1591-002	SNP array	Genotyping	26
nssv15657475	copy number loss	4-0027-002	SNP array	Genotyping	22
nssv15657904	copy number loss	3-0436-000	SNP array	Genotyping	19
nssv15658867	copy number loss	3-0630-000	SNP array	Genotyping	20
nssv15659121	copy number loss	4-0065-001	SNP array	Genotyping	19
nssv15659640	copy number loss	4-0032-001	SNP array	Genotyping	39
nssv15663276	copy number loss	4-0062-002	SNP array	Genotyping	36
nssv15663318	copy number loss	4-0062-004	SNP array	Genotyping	20
nssv15675394	copy number loss	234386S	SNP array	Genotyping	20
nssv15676377	copy number loss	209352	SNP array	Genotyping	33
nssv15678331	copy number loss	191455	SNP array	Genotyping	23
nssv15682531	copy number loss	OCD1148-8961123	SNP array	Genotyping	27
nssv15683184	copy number loss	OCD1000-S_896253	SNP array	Genotyping	27
nssv15683299	copy number loss	OCD101-1579	SNP array	Genotyping	20
nssv15683694	copy number loss	OCD139-0625-4194-1	SNP array	Genotyping	28
nssv15683726	copy number loss	OCD139-0625-4194-2	SNP array	Genotyping	30
nssv15684714	copy number loss	OCD154-896621	SNP array	Genotyping	25
nssv15684735	copy number loss	OCD154-896623	SNP array	Genotyping	28
nssv15686718	copy number loss	OCD24-S_896442	SNP array	Genotyping	17
nssv15692101	copy number loss	OCD61-PC-1273	SNP array	Genotyping	26
nssv15694180	copy number loss	OCD81-896773	SNP array	Genotyping	28
nssv15695588	copy number loss	209030	SNP array	Genotyping	19
nssv15696521	copy number gain	159785	SNP array	Genotyping	19
nssv15696840	copy number loss	218093	SNP array	Genotyping	20
nssv15698030	copy number loss	200039	SNP array	Genotyping	25
nssv15699849	copy number loss	170722	SNP array	Genotyping	24
nssv15702225	copy number loss	199156	SNP array	Genotyping	15

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15612834	Remapped	Perfect	NC_000012.12:g.(?_ 11068228)_(1109932 1_?)del	GRCh38.p12	First Pass	NC_000012.12	Chr12	11,068,228	11,099,321
nssv15614384	Remapped	Perfect	NC_000012.12:g.(?_ 11068228)_(1109932 1_?)del	GRCh38.p12	First Pass	NC_000012.12	Chr12	11,068,228	11,099,321
nssv15614717	Remapped	Perfect	NC_000012.12:g.(?_ 11068228)_(1109932 1_?)del	GRCh38.p12	First Pass	NC_000012.12	Chr12	11,068,228	11,099,321
nssv15614892	Remapped	Perfect	NC_000012.12:g.(?_ 11068228)_(1109932 1_?)del	GRCh38.p12	First Pass	NC_000012.12	Chr12	11,068,228	11,099,321
nssv15622036	Remapped	Perfect	NC_000012.12:g.(?_ 11068228)_(1109932 1_?)del	GRCh38.p12	First Pass	NC_000012.12	Chr12	11,068,228	11,099,321
nssv15623760	Remapped	Perfect	NC_000012.12:g.(?_ 11068228)_(1109932 1_?)del	GRCh38.p12	First Pass	NC_000012.12	Chr12	11,068,228	11,099,321
nssv15625829	Remapped	Perfect	NC_000012.12:g.(?_ 11068228)_(1109932 1_?)del	GRCh38.p12	First Pass	NC_000012.12	Chr12	11,068,228	11,099,321
nssv15626320	Remapped	Perfect	NC_000012.12:g.(?_ 11068228)_(1109932 1_?)del	GRCh38.p12	First Pass	NC_000012.12	Chr12	11,068,228	11,099,321
nssv15630390	Remapped	Perfect	NC_000012.12:g.(?_ 11068228)_(1109932 1_?)del	GRCh38.p12	First Pass	NC_000012.12	Chr12	11,068,228	11,099,321
nssv15631034	Remapped	Perfect	NC_000012.12:g.(?_ 11068228)_(1109932 1_?)del	GRCh38.p12	First Pass	NC_000012.12	Chr12	11,068,228	11,099,321
nssv15633059	Remapped	Perfect	NC_000012.12:g.(?_ 11068228)_(1109932 1_?)del	GRCh38.p12	First Pass	NC_000012.12	Chr12	11,068,228	11,099,321
nssv15637260	Remapped	Perfect	NC_000012.12:g.(?_ 11068228)_(1109932 1_?)del	GRCh38.p12	First Pass	NC_000012.12	Chr12	11,068,228	11,099,321
nssv15654175	Remapped	Perfect	NC_000012.12:g.(?_ 11068228)_(1109932 1_?)del	GRCh38.p12	First Pass	NC_000012.12	Chr12	11,068,228	11,099,321
nssv15657475	Remapped	Perfect	NC_000012.12:g.(?_ 11068228)_(1109932 1_?)del	GRCh38.p12	First Pass	NC_000012.12	Chr12	11,068,228	11,099,321
nssv15657904	Remapped	Perfect	NC_000012.12:g.(?_ 11068228)_(1109932 1_?)del	GRCh38.p12	First Pass	NC_000012.12	Chr12	11,068,228	11,099,321
nssv15658867	Remapped	Perfect	NC_000012.12:g.(?_ 11068228)_(1109932 1_?)del	GRCh38.p12	First Pass	NC_000012.12	Chr12	11,068,228	11,099,321
nssv15659121	Remapped	Perfect	NC_000012.12:g.(?_ 11068228)_(1109932 1_?)del	GRCh38.p12	First Pass	NC_000012.12	Chr12	11,068,228	11,099,321
nssv15659640	Remapped	Perfect	NC_000012.12:g.(?_ 11068228)_(1109932 1_?)del	GRCh38.p12	First Pass	NC_000012.12	Chr12	11,068,228	11,099,321
nssv15663276	Remapped	Perfect	NC_000012.12:g.(?_ 11068228)_(1109932 1_?)del	GRCh38.p12	First Pass	NC_000012.12	Chr12	11,068,228	11,099,321
nssv15663318	Remapped	Perfect	NC_000012.12:g.(?_ 11068228)_(1109932 1_?)del	GRCh38.p12	First Pass	NC_000012.12	Chr12	11,068,228	11,099,321
nssv15675394	Remapped	Perfect	NC_000012.12:g.(?_ 11068228)_(1109932 1_?)del	GRCh38.p12	First Pass	NC_000012.12	Chr12	11,068,228	11,099,321
nssv15676377	Remapped	Perfect	NC_000012.12:g.(?_ 11068228)_(1109932 1_?)del	GRCh38.p12	First Pass	NC_000012.12	Chr12	11,068,228	11,099,321
nssv15678331	Remapped	Perfect	NC_000012.12:g.(?_ 11068228)_(1109932 1_?)del	GRCh38.p12	First Pass	NC_000012.12	Chr12	11,068,228	11,099,321
nssv15682531	Remapped	Perfect	NC_000012.12:g.(?_ 11068228)_(1109932 1_?)del	GRCh38.p12	First Pass	NC_000012.12	Chr12	11,068,228	11,099,321
nssv15683184	Remapped	Perfect	NC_000012.12:g.(?_ 11068228)_(1109932 1_?)del	GRCh38.p12	First Pass	NC_000012.12	Chr12	11,068,228	11,099,321
nssv15683299	Remapped	Perfect	NC_000012.12:g.(?_ 11068228)_(1109932 1_?)del	GRCh38.p12	First Pass	NC_000012.12	Chr12	11,068,228	11,099,321
nssv15683694	Remapped	Perfect	NC_000012.12:g.(?_ 11068228)_(1109932 1_?)del	GRCh38.p12	First Pass	NC_000012.12	Chr12	11,068,228	11,099,321
nssv15683726	Remapped	Perfect	NC_000012.12:g.(?_ 11068228)_(1109932 1_?)del	GRCh38.p12	First Pass	NC_000012.12	Chr12	11,068,228	11,099,321
nssv15684714	Remapped	Perfect	NC_000012.12:g.(?_ 11068228)_(1109932 1_?)del	GRCh38.p12	First Pass	NC_000012.12	Chr12	11,068,228	11,099,321
nssv15684735	Remapped	Perfect	NC_000012.12:g.(?_ 11068228)_(1109932 1_?)del	GRCh38.p12	First Pass	NC_000012.12	Chr12	11,068,228	11,099,321
nssv15686718	Remapped	Perfect	NC_000012.12:g.(?_ 11068228)_(1109932 1_?)del	GRCh38.p12	First Pass	NC_000012.12	Chr12	11,068,228	11,099,321
nssv15692101	Remapped	Perfect	NC_000012.12:g.(?_ 11068228)_(1109932 1_?)del	GRCh38.p12	First Pass	NC_000012.12	Chr12	11,068,228	11,099,321
nssv15694180	Remapped	Perfect	NC_000012.12:g.(?_ 11068228)_(1109932 1_?)del	GRCh38.p12	First Pass	NC_000012.12	Chr12	11,068,228	11,099,321
nssv15695588	Remapped	Perfect	NC_000012.12:g.(?_ 11068228)_(1109932 1_?)del	GRCh38.p12	First Pass	NC_000012.12	Chr12	11,068,228	11,099,321
nssv15696521	Remapped	Perfect	NC_000012.12:g.(?_ 11068228)_(1109932 1_?)dup	GRCh38.p12	First Pass	NC_000012.12	Chr12	11,068,228	11,099,321
nssv15696840	Remapped	Perfect	NC_000012.12:g.(?_ 11068228)_(1109932 1_?)del	GRCh38.p12	First Pass	NC_000012.12	Chr12	11,068,228	11,099,321
nssv15698030	Remapped	Perfect	NC_000012.12:g.(?_ 11068228)_(1109932 1_?)del	GRCh38.p12	First Pass	NC_000012.12	Chr12	11,068,228	11,099,321
nssv15699849	Remapped	Perfect	NC_000012.12:g.(?_ 11068228)_(1109932 1_?)del	GRCh38.p12	First Pass	NC_000012.12	Chr12	11,068,228	11,099,321
nssv15702225	Remapped	Perfect	NC_000012.12:g.(?_ 11068228)_(1109932 1_?)del	GRCh38.p12	First Pass	NC_000012.12	Chr12	11,068,228	11,099,321
nssv15612834	Submitted genomic		NC_000012.11:g.(?_ 11220827)_(1125192 0_?)del	GRCh37 (hg19)		NC_000012.11	Chr12	11,220,827	11,251,920
nssv15614384	Submitted genomic		NC_000012.11:g.(?_ 11220827)_(1125192 0_?)del	GRCh37 (hg19)		NC_000012.11	Chr12	11,220,827	11,251,920
nssv15614717	Submitted genomic		NC_000012.11:g.(?_ 11220827)_(1125192 0_?)del	GRCh37 (hg19)		NC_000012.11	Chr12	11,220,827	11,251,920
nssv15614892	Submitted genomic		NC_000012.11:g.(?_ 11220827)_(1125192 0_?)del	GRCh37 (hg19)		NC_000012.11	Chr12	11,220,827	11,251,920
nssv15622036	Submitted genomic		NC_000012.11:g.(?_ 11220827)_(1125192 0_?)del	GRCh37 (hg19)		NC_000012.11	Chr12	11,220,827	11,251,920
nssv15623760	Submitted genomic		NC_000012.11:g.(?_ 11220827)_(1125192 0_?)del	GRCh37 (hg19)		NC_000012.11	Chr12	11,220,827	11,251,920
nssv15625829	Submitted genomic		NC_000012.11:g.(?_ 11220827)_(1125192 0_?)del	GRCh37 (hg19)		NC_000012.11	Chr12	11,220,827	11,251,920
nssv15626320	Submitted genomic		NC_000012.11:g.(?_ 11220827)_(1125192 0_?)del	GRCh37 (hg19)		NC_000012.11	Chr12	11,220,827	11,251,920
nssv15630390	Submitted genomic		NC_000012.11:g.(?_ 11220827)_(1125192 0_?)del	GRCh37 (hg19)		NC_000012.11	Chr12	11,220,827	11,251,920
nssv15631034	Submitted genomic		NC_000012.11:g.(?_ 11220827)_(1125192 0_?)del	GRCh37 (hg19)		NC_000012.11	Chr12	11,220,827	11,251,920
nssv15633059	Submitted genomic		NC_000012.11:g.(?_ 11220827)_(1125192 0_?)del	GRCh37 (hg19)		NC_000012.11	Chr12	11,220,827	11,251,920
nssv15637260	Submitted genomic		NC_000012.11:g.(?_ 11220827)_(1125192 0_?)del	GRCh37 (hg19)		NC_000012.11	Chr12	11,220,827	11,251,920
nssv15654175	Submitted genomic		NC_000012.11:g.(?_ 11220827)_(1125192 0_?)del	GRCh37 (hg19)		NC_000012.11	Chr12	11,220,827	11,251,920
nssv15657475	Submitted genomic		NC_000012.11:g.(?_ 11220827)_(1125192 0_?)del	GRCh37 (hg19)		NC_000012.11	Chr12	11,220,827	11,251,920
nssv15657904	Submitted genomic		NC_000012.11:g.(?_ 11220827)_(1125192 0_?)del	GRCh37 (hg19)		NC_000012.11	Chr12	11,220,827	11,251,920
nssv15658867	Submitted genomic		NC_000012.11:g.(?_ 11220827)_(1125192 0_?)del	GRCh37 (hg19)		NC_000012.11	Chr12	11,220,827	11,251,920
nssv15659121	Submitted genomic		NC_000012.11:g.(?_ 11220827)_(1125192 0_?)del	GRCh37 (hg19)		NC_000012.11	Chr12	11,220,827	11,251,920
nssv15659640	Submitted genomic		NC_000012.11:g.(?_ 11220827)_(1125192 0_?)del	GRCh37 (hg19)		NC_000012.11	Chr12	11,220,827	11,251,920
nssv15663276	Submitted genomic		NC_000012.11:g.(?_ 11220827)_(1125192 0_?)del	GRCh37 (hg19)		NC_000012.11	Chr12	11,220,827	11,251,920
nssv15663318	Submitted genomic		NC_000012.11:g.(?_ 11220827)_(1125192 0_?)del	GRCh37 (hg19)		NC_000012.11	Chr12	11,220,827	11,251,920
nssv15675394	Submitted genomic		NC_000012.11:g.(?_ 11220827)_(1125192 0_?)del	GRCh37 (hg19)		NC_000012.11	Chr12	11,220,827	11,251,920
nssv15676377	Submitted genomic		NC_000012.11:g.(?_ 11220827)_(1125192 0_?)del	GRCh37 (hg19)		NC_000012.11	Chr12	11,220,827	11,251,920
nssv15678331	Submitted genomic		NC_000012.11:g.(?_ 11220827)_(1125192 0_?)del	GRCh37 (hg19)		NC_000012.11	Chr12	11,220,827	11,251,920
nssv15682531	Submitted genomic		NC_000012.11:g.(?_ 11220827)_(1125192 0_?)del	GRCh37 (hg19)		NC_000012.11	Chr12	11,220,827	11,251,920
nssv15683184	Submitted genomic		NC_000012.11:g.(?_ 11220827)_(1125192 0_?)del	GRCh37 (hg19)		NC_000012.11	Chr12	11,220,827	11,251,920
nssv15683299	Submitted genomic		NC_000012.11:g.(?_ 11220827)_(1125192 0_?)del	GRCh37 (hg19)		NC_000012.11	Chr12	11,220,827	11,251,920
nssv15683694	Submitted genomic		NC_000012.11:g.(?_ 11220827)_(1125192 0_?)del	GRCh37 (hg19)		NC_000012.11	Chr12	11,220,827	11,251,920
nssv15683726	Submitted genomic		NC_000012.11:g.(?_ 11220827)_(1125192 0_?)del	GRCh37 (hg19)		NC_000012.11	Chr12	11,220,827	11,251,920
nssv15684714	Submitted genomic		NC_000012.11:g.(?_ 11220827)_(1125192 0_?)del	GRCh37 (hg19)		NC_000012.11	Chr12	11,220,827	11,251,920
nssv15684735	Submitted genomic		NC_000012.11:g.(?_ 11220827)_(1125192 0_?)del	GRCh37 (hg19)		NC_000012.11	Chr12	11,220,827	11,251,920
nssv15686718	Submitted genomic		NC_000012.11:g.(?_ 11220827)_(1125192 0_?)del	GRCh37 (hg19)		NC_000012.11	Chr12	11,220,827	11,251,920
nssv15692101	Submitted genomic		NC_000012.11:g.(?_ 11220827)_(1125192 0_?)del	GRCh37 (hg19)		NC_000012.11	Chr12	11,220,827	11,251,920
nssv15694180	Submitted genomic		NC_000012.11:g.(?_ 11220827)_(1125192 0_?)del	GRCh37 (hg19)		NC_000012.11	Chr12	11,220,827	11,251,920
nssv15695588	Submitted genomic		NC_000012.11:g.(?_ 11220827)_(1125192 0_?)del	GRCh37 (hg19)		NC_000012.11	Chr12	11,220,827	11,251,920
nssv15696521	Submitted genomic		NC_000012.11:g.(?_ 11220827)_(1125192 0_?)dup	GRCh37 (hg19)		NC_000012.11	Chr12	11,220,827	11,251,920
nssv15696840	Submitted genomic		NC_000012.11:g.(?_ 11220827)_(1125192 0_?)del	GRCh37 (hg19)		NC_000012.11	Chr12	11,220,827	11,251,920
nssv15698030	Submitted genomic		NC_000012.11:g.(?_ 11220827)_(1125192 0_?)del	GRCh37 (hg19)		NC_000012.11	Chr12	11,220,827	11,251,920
nssv15699849	Submitted genomic		NC_000012.11:g.(?_ 11220827)_(1125192 0_?)del	GRCh37 (hg19)		NC_000012.11	Chr12	11,220,827	11,251,920
nssv15702225	Submitted genomic		NC_000012.11:g.(?_ 11220827)_(1125192 0_?)del	GRCh37 (hg19)		NC_000012.11	Chr12	11,220,827	11,251,920

dbVar

Database of genomic structural variation

nsv4366036

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant