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dbVar

Database of genomic structural variation

nsv4366564

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:44,718

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 378 SVs from 79 studies. See in: genome view

Remapped(Score: Perfect):59,042,992-59,087,709

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4366564	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000011.10	Chr11	59,042,992	59,087,709
nsv4366564	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000011.9	Chr11	58,810,465	58,855,182

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15614622	copy number gain	1-0735-003	SNP array	Genotyping	29
nssv15619593	copy number gain	1-0953-003	SNP array	Genotyping	23
nssv15642460	copy number gain	15-1119-004	SNP array	Genotyping	20
nssv15671685	copy number gain	9-0004-001	SNP array	Genotyping	25
nssv15674175	copy number gain	9-0021-003	SNP array	Genotyping	18
nssv15701570	copy number gain	218101	SNP array	Genotyping	38

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15614622	Remapped	Perfect	NC_000011.10:g.(?_ 59042992)_(5908770 9_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	59,042,992	59,087,709
nssv15619593	Remapped	Perfect	NC_000011.10:g.(?_ 59042992)_(5908770 9_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	59,042,992	59,087,709
nssv15642460	Remapped	Perfect	NC_000011.10:g.(?_ 59042992)_(5908770 9_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	59,042,992	59,087,709
nssv15671685	Remapped	Perfect	NC_000011.10:g.(?_ 59042992)_(5908770 9_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	59,042,992	59,087,709
nssv15674175	Remapped	Perfect	NC_000011.10:g.(?_ 59042992)_(5908770 9_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	59,042,992	59,087,709
nssv15701570	Remapped	Perfect	NC_000011.10:g.(?_ 59042992)_(5908770 9_?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	59,042,992	59,087,709
nssv15614622	Submitted genomic		NC_000011.9:g.(?_5 8810465)_(58855182 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	58,810,465	58,855,182
nssv15619593	Submitted genomic		NC_000011.9:g.(?_5 8810465)_(58855182 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	58,810,465	58,855,182
nssv15642460	Submitted genomic		NC_000011.9:g.(?_5 8810465)_(58855182 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	58,810,465	58,855,182
nssv15671685	Submitted genomic		NC_000011.9:g.(?_5 8810465)_(58855182 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	58,810,465	58,855,182
nssv15674175	Submitted genomic		NC_000011.9:g.(?_5 8810465)_(58855182 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	58,810,465	58,855,182
nssv15701570	Submitted genomic		NC_000011.9:g.(?_5 8810465)_(58855182 _?)dup	GRCh37 (hg19)		NC_000011.9	Chr11	58,810,465	58,855,182

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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