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dbVar

Database of genomic structural variation

nsv4366685

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:4
Validation:Not tested
Clinical Assertions: No
Region Size:22,488

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 225 SVs from 59 studies. See in: genome view

Remapped(Score: Perfect):76,139,520-76,162,007

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4366685	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	76,139,520	76,162,007
nsv4366685	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000005.9	Chr5	75,435,345	75,457,832

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15617708	copy number gain	1-0837-003	SNP array	Genotyping	30
nssv15656227	copy number gain	3-0709-000	SNP array	Genotyping	19
nssv15683456	copy number gain	OCD124-B_188563	SNP array	Genotyping	28
nssv15685333	copy number gain	OCD117-S_1697	SNP array	Genotyping	20

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15617708	Remapped	Perfect	NC_000005.10:g.(?_ 76139520)_(7616200 7_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	76,139,520	76,162,007
nssv15656227	Remapped	Perfect	NC_000005.10:g.(?_ 76139520)_(7616200 7_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	76,139,520	76,162,007
nssv15683456	Remapped	Perfect	NC_000005.10:g.(?_ 76139520)_(7616200 7_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	76,139,520	76,162,007
nssv15685333	Remapped	Perfect	NC_000005.10:g.(?_ 76139520)_(7616200 7_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	76,139,520	76,162,007
nssv15617708	Submitted genomic		NC_000005.9:g.(?_7 5435345)_(75457832 _?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	75,435,345	75,457,832
nssv15656227	Submitted genomic		NC_000005.9:g.(?_7 5435345)_(75457832 _?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	75,435,345	75,457,832
nssv15683456	Submitted genomic		NC_000005.9:g.(?_7 5435345)_(75457832 _?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	75,435,345	75,457,832
nssv15685333	Submitted genomic		NC_000005.9:g.(?_7 5435345)_(75457832 _?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	75,435,345	75,457,832

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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