Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv4367366

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:4
Validation:Not tested
Clinical Assertions: No
Region Size:28,561

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 498 SVs from 74 studies. See in: genome view

Remapped(Score: Perfect):4,160,655-4,189,215

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4367366	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000002.12	Chr2	4,160,655	4,189,215
nsv4367366	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000002.11	Chr2	4,208,245	4,236,805

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15640080	copy number loss	14-0103-002	SNP array	Genotyping	23
nssv15644187	copy number loss	16-1003-001	SNP array	Genotyping	22
nssv15661130	copy number loss	4-0079-003	SNP array	Genotyping	18
nssv15686304	copy number loss	OCD31-S_896571	SNP array	Genotyping	20

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15640080	Remapped	Perfect	NC_000002.12:g.(?_ 4160655)_(4189215_ ?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	4,160,655	4,189,215
nssv15644187	Remapped	Perfect	NC_000002.12:g.(?_ 4160655)_(4189215_ ?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	4,160,655	4,189,215
nssv15661130	Remapped	Perfect	NC_000002.12:g.(?_ 4160655)_(4189215_ ?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	4,160,655	4,189,215
nssv15686304	Remapped	Perfect	NC_000002.12:g.(?_ 4160655)_(4189215_ ?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	4,160,655	4,189,215
nssv15640080	Submitted genomic		NC_000002.11:g.(?_ 4208245)_(4236805_ ?)del	GRCh37 (hg19)		NC_000002.11	Chr2	4,208,245	4,236,805
nssv15644187	Submitted genomic		NC_000002.11:g.(?_ 4208245)_(4236805_ ?)del	GRCh37 (hg19)		NC_000002.11	Chr2	4,208,245	4,236,805
nssv15661130	Submitted genomic		NC_000002.11:g.(?_ 4208245)_(4236805_ ?)del	GRCh37 (hg19)		NC_000002.11	Chr2	4,208,245	4,236,805
nssv15686304	Submitted genomic		NC_000002.11:g.(?_ 4208245)_(4236805_ ?)del	GRCh37 (hg19)		NC_000002.11	Chr2	4,208,245	4,236,805

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

You are here: NCBI