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dbVar

Database of genomic structural variation

nsv4367791

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:5
Validation:Not tested
Clinical Assertions: No
Region Size:254,878

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 2621 SVs from 112 studies. See in: genome view

Remapped(Score: Perfect):25,260,271-25,515,148

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4367791	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000022.11	Chr22	25,260,271	25,515,148
nsv4367791	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000022.10	Chr22	25,656,238	25,911,115

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15624080	copy number gain	1-0291-001	SNP array	Genotyping	12
nssv15653057	copy number gain	2-1620-003	SNP array	Genotyping	26
nssv15684425	copy number gain	OCD114-S_1686	SNP array	Genotyping	18
nssv15687436	copy number gain	OCD160-0625-4932-3	SNP array	Genotyping	19
nssv15692127	copy number gain	OCD64-BF-1422	SNP array	Genotyping	17

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15624080	Remapped	Perfect	NC_000022.11:g.(?_ 25260271)_(2551514 8_?)dup	GRCh38.p12	First Pass	NC_000022.11	Chr22	25,260,271	25,515,148
nssv15653057	Remapped	Perfect	NC_000022.11:g.(?_ 25260271)_(2551514 8_?)dup	GRCh38.p12	First Pass	NC_000022.11	Chr22	25,260,271	25,515,148
nssv15684425	Remapped	Perfect	NC_000022.11:g.(?_ 25260271)_(2551514 8_?)dup	GRCh38.p12	First Pass	NC_000022.11	Chr22	25,260,271	25,515,148
nssv15687436	Remapped	Perfect	NC_000022.11:g.(?_ 25260271)_(2551514 8_?)dup	GRCh38.p12	First Pass	NC_000022.11	Chr22	25,260,271	25,515,148
nssv15692127	Remapped	Perfect	NC_000022.11:g.(?_ 25260271)_(2551514 8_?)dup	GRCh38.p12	First Pass	NC_000022.11	Chr22	25,260,271	25,515,148
nssv15624080	Submitted genomic		NC_000022.10:g.(?_ 25656238)_(2591111 5_?)dup	GRCh37 (hg19)		NC_000022.10	Chr22	25,656,238	25,911,115
nssv15653057	Submitted genomic		NC_000022.10:g.(?_ 25656238)_(2591111 5_?)dup	GRCh37 (hg19)		NC_000022.10	Chr22	25,656,238	25,911,115
nssv15684425	Submitted genomic		NC_000022.10:g.(?_ 25656238)_(2591111 5_?)dup	GRCh37 (hg19)		NC_000022.10	Chr22	25,656,238	25,911,115
nssv15687436	Submitted genomic		NC_000022.10:g.(?_ 25656238)_(2591111 5_?)dup	GRCh37 (hg19)		NC_000022.10	Chr22	25,656,238	25,911,115
nssv15692127	Submitted genomic		NC_000022.10:g.(?_ 25656238)_(2591111 5_?)dup	GRCh37 (hg19)		NC_000022.10	Chr22	25,656,238	25,911,115

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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