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dbVar

Database of genomic structural variation

nsv4367952

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:7
Validation:Not tested
Clinical Assertions: No
Region Size:34,274

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 430 SVs from 39 studies. See in: genome view

Remapped(Score: Perfect):4,459,854-4,494,127

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4367952	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000018.10	Chr18	4,459,854	4,494,127
nsv4367952	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000018.9	Chr18	4,459,854	4,494,127

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15634919	copy number loss	12-4425-001	SNP array	Genotyping	15
nssv15634963	copy number loss	12-4425-003	SNP array	Genotyping	20
nssv15634983	copy number loss	12-4425-004	SNP array	Genotyping	22
nssv15635025	copy number loss	12-4425-007	SNP array	Genotyping	22
nssv15635461	copy number loss	12-4425-005	SNP array	Genotyping	24
nssv15641717	copy number loss	14-0271-003	SNP array	Genotyping	18
nssv15698981	copy number loss	201189	SNP array	Genotyping	22

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15634919	Remapped	Perfect	NC_000018.10:g.(?_ 4459854)_(4494127_ ?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	4,459,854	4,494,127
nssv15634963	Remapped	Perfect	NC_000018.10:g.(?_ 4459854)_(4494127_ ?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	4,459,854	4,494,127
nssv15634983	Remapped	Perfect	NC_000018.10:g.(?_ 4459854)_(4494127_ ?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	4,459,854	4,494,127
nssv15635025	Remapped	Perfect	NC_000018.10:g.(?_ 4459854)_(4494127_ ?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	4,459,854	4,494,127
nssv15635461	Remapped	Perfect	NC_000018.10:g.(?_ 4459854)_(4494127_ ?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	4,459,854	4,494,127
nssv15641717	Remapped	Perfect	NC_000018.10:g.(?_ 4459854)_(4494127_ ?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	4,459,854	4,494,127
nssv15698981	Remapped	Perfect	NC_000018.10:g.(?_ 4459854)_(4494127_ ?)del	GRCh38.p12	First Pass	NC_000018.10	Chr18	4,459,854	4,494,127
nssv15634919	Submitted genomic		NC_000018.9:g.(?_4 459854)_(4494127_? )del	GRCh37 (hg19)		NC_000018.9	Chr18	4,459,854	4,494,127
nssv15634963	Submitted genomic		NC_000018.9:g.(?_4 459854)_(4494127_? )del	GRCh37 (hg19)		NC_000018.9	Chr18	4,459,854	4,494,127
nssv15634983	Submitted genomic		NC_000018.9:g.(?_4 459854)_(4494127_? )del	GRCh37 (hg19)		NC_000018.9	Chr18	4,459,854	4,494,127
nssv15635025	Submitted genomic		NC_000018.9:g.(?_4 459854)_(4494127_? )del	GRCh37 (hg19)		NC_000018.9	Chr18	4,459,854	4,494,127
nssv15635461	Submitted genomic		NC_000018.9:g.(?_4 459854)_(4494127_? )del	GRCh37 (hg19)		NC_000018.9	Chr18	4,459,854	4,494,127
nssv15641717	Submitted genomic		NC_000018.9:g.(?_4 459854)_(4494127_? )del	GRCh37 (hg19)		NC_000018.9	Chr18	4,459,854	4,494,127
nssv15698981	Submitted genomic		NC_000018.9:g.(?_4 459854)_(4494127_? )del	GRCh37 (hg19)		NC_000018.9	Chr18	4,459,854	4,494,127

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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