nsv4368173

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:30
Validation:Not tested
Clinical Assertions: No
Region Size:67,945

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 772 SVs from 83 studies. See in: genome view

Remapped(Score: Perfect):180,947,484-181,015,428

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4368173	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	180,947,484	181,015,428
nsv4368173	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000005.9	Chr5	180,374,484	180,442,428

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15611712	copy number gain	1-0112-001	SNP array	Genotyping	16
nssv15617032	copy number gain	1-0834-004	SNP array	Genotyping	20
nssv15620182	copy number gain	1-0951-003	SNP array	Genotyping	25
nssv15623434	copy number gain	1-0261-001	SNP array	Genotyping	27
nssv15624133	copy number gain	1-0261-003	SNP array	Genotyping	20
nssv15627520	copy number gain	1-0488-001	SNP array	Genotyping	15
nssv15629193	copy number gain	1-0566-001	SNP array	Genotyping	23
nssv15629249	copy number gain	1-0566-003	SNP array	Genotyping	21
nssv15630048	copy number gain	1-0599-005	SNP array	Genotyping	23
nssv15634614	copy number gain	12-4310-001	SNP array	Genotyping	20
nssv15635261	copy number gain	12-4139-003	SNP array	Genotyping	27
nssv15635489	copy number gain	12-4453-002	SNP array	Genotyping	28
nssv15637137	copy number gain	12-4855-001	SNP array	Genotyping	22
nssv15638214	copy number gain	14-0050-002	SNP array	Genotyping	20
nssv15640857	copy number gain	14-0273-003	SNP array	Genotyping	16
nssv15641896	copy number gain	14-0382-002	SNP array	Genotyping	25
nssv15643858	copy number gain	16-1005-003	SNP array	Genotyping	13
nssv15646059	copy number gain	16-1011-005	SNP array	Genotyping	16
nssv15649731	copy number gain	2-1334-001	SNP array	Genotyping	19
nssv15656681	copy number gain	3-0352-000	SNP array	Genotyping	24
nssv15664264	copy number gain	7-0052-003	SNP array	Genotyping	33
nssv15667869	copy number gain	7-0132-003	SNP array	Genotyping	20
nssv15670458	copy number gain	7-0173-003	SNP array	Genotyping	31
nssv15670475	copy number gain	7-0174-003	SNP array	Genotyping	16
nssv15671417	copy number gain	7-0286-004	SNP array	Genotyping	32
nssv15671868	copy number gain	9-0018-002	SNP array	Genotyping	16
nssv15674344	copy number gain	9-0034-001	SNP array	Genotyping	28
nssv15676648	copy number gain	181068	SNP array	Genotyping	13
nssv15677415	copy number gain	159772	SNP array	Genotyping	18
nssv15680259	copy number gain	222688	SNP array	Genotyping	20

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15611712	Remapped	Perfect	NC_000005.10:g.(?_ 180947484)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,947,484	181,015,428
nssv15617032	Remapped	Perfect	NC_000005.10:g.(?_ 180947484)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,947,484	181,015,428
nssv15620182	Remapped	Perfect	NC_000005.10:g.(?_ 180947484)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,947,484	181,015,428
nssv15623434	Remapped	Perfect	NC_000005.10:g.(?_ 180947484)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,947,484	181,015,428
nssv15624133	Remapped	Perfect	NC_000005.10:g.(?_ 180947484)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,947,484	181,015,428
nssv15627520	Remapped	Perfect	NC_000005.10:g.(?_ 180947484)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,947,484	181,015,428
nssv15629193	Remapped	Perfect	NC_000005.10:g.(?_ 180947484)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,947,484	181,015,428
nssv15629249	Remapped	Perfect	NC_000005.10:g.(?_ 180947484)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,947,484	181,015,428
nssv15630048	Remapped	Perfect	NC_000005.10:g.(?_ 180947484)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,947,484	181,015,428
nssv15634614	Remapped	Perfect	NC_000005.10:g.(?_ 180947484)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,947,484	181,015,428
nssv15635261	Remapped	Perfect	NC_000005.10:g.(?_ 180947484)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,947,484	181,015,428
nssv15635489	Remapped	Perfect	NC_000005.10:g.(?_ 180947484)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,947,484	181,015,428
nssv15637137	Remapped	Perfect	NC_000005.10:g.(?_ 180947484)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,947,484	181,015,428
nssv15638214	Remapped	Perfect	NC_000005.10:g.(?_ 180947484)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,947,484	181,015,428
nssv15640857	Remapped	Perfect	NC_000005.10:g.(?_ 180947484)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,947,484	181,015,428
nssv15641896	Remapped	Perfect	NC_000005.10:g.(?_ 180947484)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,947,484	181,015,428
nssv15643858	Remapped	Perfect	NC_000005.10:g.(?_ 180947484)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,947,484	181,015,428
nssv15646059	Remapped	Perfect	NC_000005.10:g.(?_ 180947484)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,947,484	181,015,428
nssv15649731	Remapped	Perfect	NC_000005.10:g.(?_ 180947484)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,947,484	181,015,428
nssv15656681	Remapped	Perfect	NC_000005.10:g.(?_ 180947484)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,947,484	181,015,428
nssv15664264	Remapped	Perfect	NC_000005.10:g.(?_ 180947484)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,947,484	181,015,428
nssv15667869	Remapped	Perfect	NC_000005.10:g.(?_ 180947484)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,947,484	181,015,428
nssv15670458	Remapped	Perfect	NC_000005.10:g.(?_ 180947484)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,947,484	181,015,428
nssv15670475	Remapped	Perfect	NC_000005.10:g.(?_ 180947484)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,947,484	181,015,428
nssv15671417	Remapped	Perfect	NC_000005.10:g.(?_ 180947484)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,947,484	181,015,428
nssv15671868	Remapped	Perfect	NC_000005.10:g.(?_ 180947484)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,947,484	181,015,428
nssv15674344	Remapped	Perfect	NC_000005.10:g.(?_ 180947484)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,947,484	181,015,428
nssv15676648	Remapped	Perfect	NC_000005.10:g.(?_ 180947484)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,947,484	181,015,428
nssv15677415	Remapped	Perfect	NC_000005.10:g.(?_ 180947484)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,947,484	181,015,428
nssv15680259	Remapped	Perfect	NC_000005.10:g.(?_ 180947484)_(181015 428_?)dup	GRCh38.p12	First Pass	NC_000005.10	Chr5	180,947,484	181,015,428
nssv15611712	Submitted genomic		NC_000005.9:g.(?_1 80374484)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,374,484	180,442,428
nssv15617032	Submitted genomic		NC_000005.9:g.(?_1 80374484)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,374,484	180,442,428
nssv15620182	Submitted genomic		NC_000005.9:g.(?_1 80374484)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,374,484	180,442,428
nssv15623434	Submitted genomic		NC_000005.9:g.(?_1 80374484)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,374,484	180,442,428
nssv15624133	Submitted genomic		NC_000005.9:g.(?_1 80374484)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,374,484	180,442,428
nssv15627520	Submitted genomic		NC_000005.9:g.(?_1 80374484)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,374,484	180,442,428
nssv15629193	Submitted genomic		NC_000005.9:g.(?_1 80374484)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,374,484	180,442,428
nssv15629249	Submitted genomic		NC_000005.9:g.(?_1 80374484)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,374,484	180,442,428
nssv15630048	Submitted genomic		NC_000005.9:g.(?_1 80374484)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,374,484	180,442,428
nssv15634614	Submitted genomic		NC_000005.9:g.(?_1 80374484)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,374,484	180,442,428
nssv15635261	Submitted genomic		NC_000005.9:g.(?_1 80374484)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,374,484	180,442,428
nssv15635489	Submitted genomic		NC_000005.9:g.(?_1 80374484)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,374,484	180,442,428
nssv15637137	Submitted genomic		NC_000005.9:g.(?_1 80374484)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,374,484	180,442,428
nssv15638214	Submitted genomic		NC_000005.9:g.(?_1 80374484)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,374,484	180,442,428
nssv15640857	Submitted genomic		NC_000005.9:g.(?_1 80374484)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,374,484	180,442,428
nssv15641896	Submitted genomic		NC_000005.9:g.(?_1 80374484)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,374,484	180,442,428
nssv15643858	Submitted genomic		NC_000005.9:g.(?_1 80374484)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,374,484	180,442,428
nssv15646059	Submitted genomic		NC_000005.9:g.(?_1 80374484)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,374,484	180,442,428
nssv15649731	Submitted genomic		NC_000005.9:g.(?_1 80374484)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,374,484	180,442,428
nssv15656681	Submitted genomic		NC_000005.9:g.(?_1 80374484)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,374,484	180,442,428
nssv15664264	Submitted genomic		NC_000005.9:g.(?_1 80374484)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,374,484	180,442,428
nssv15667869	Submitted genomic		NC_000005.9:g.(?_1 80374484)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,374,484	180,442,428
nssv15670458	Submitted genomic		NC_000005.9:g.(?_1 80374484)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,374,484	180,442,428
nssv15670475	Submitted genomic		NC_000005.9:g.(?_1 80374484)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,374,484	180,442,428
nssv15671417	Submitted genomic		NC_000005.9:g.(?_1 80374484)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,374,484	180,442,428
nssv15671868	Submitted genomic		NC_000005.9:g.(?_1 80374484)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,374,484	180,442,428
nssv15674344	Submitted genomic		NC_000005.9:g.(?_1 80374484)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,374,484	180,442,428
nssv15676648	Submitted genomic		NC_000005.9:g.(?_1 80374484)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,374,484	180,442,428
nssv15677415	Submitted genomic		NC_000005.9:g.(?_1 80374484)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,374,484	180,442,428
nssv15680259	Submitted genomic		NC_000005.9:g.(?_1 80374484)_(1804424 28_?)dup	GRCh37 (hg19)		NC_000005.9	Chr5	180,374,484	180,442,428

dbVar

Database of genomic structural variation

nsv4368173

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant