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dbVar

Database of genomic structural variation

nsv4368763

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:20,537

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 166 SVs from 40 studies. See in: genome view

Remapped(Score: Perfect):28,191,133-28,211,669

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4368763	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000022.11	Chr22	28,191,133	28,211,669
nsv4368763	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000022.10	Chr22	28,587,121	28,607,657

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15622596	copy number loss	1-0255-001	SNP array	Genotyping	28
nssv15648172	copy number loss	2-1235-001	SNP array	Genotyping	23
nssv15648213	copy number loss	2-1235-003	SNP array	Genotyping	16
nssv15648231	copy number loss	2-1235-004	SNP array	Genotyping	19
nssv15679258	copy number loss	205647	SNP array	Genotyping	22
nssv15694277	copy number loss	OCD84-896822	SNP array	Genotyping	23

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15622596	Remapped	Perfect	NC_000022.11:g.(?_ 28191133)_(2821166 9_?)del	GRCh38.p12	First Pass	NC_000022.11	Chr22	28,191,133	28,211,669
nssv15648172	Remapped	Perfect	NC_000022.11:g.(?_ 28191133)_(2821166 9_?)del	GRCh38.p12	First Pass	NC_000022.11	Chr22	28,191,133	28,211,669
nssv15648213	Remapped	Perfect	NC_000022.11:g.(?_ 28191133)_(2821166 9_?)del	GRCh38.p12	First Pass	NC_000022.11	Chr22	28,191,133	28,211,669
nssv15648231	Remapped	Perfect	NC_000022.11:g.(?_ 28191133)_(2821166 9_?)del	GRCh38.p12	First Pass	NC_000022.11	Chr22	28,191,133	28,211,669
nssv15679258	Remapped	Perfect	NC_000022.11:g.(?_ 28191133)_(2821166 9_?)del	GRCh38.p12	First Pass	NC_000022.11	Chr22	28,191,133	28,211,669
nssv15694277	Remapped	Perfect	NC_000022.11:g.(?_ 28191133)_(2821166 9_?)del	GRCh38.p12	First Pass	NC_000022.11	Chr22	28,191,133	28,211,669
nssv15622596	Submitted genomic		NC_000022.10:g.(?_ 28587121)_(2860765 7_?)del	GRCh37 (hg19)		NC_000022.10	Chr22	28,587,121	28,607,657
nssv15648172	Submitted genomic		NC_000022.10:g.(?_ 28587121)_(2860765 7_?)del	GRCh37 (hg19)		NC_000022.10	Chr22	28,587,121	28,607,657
nssv15648213	Submitted genomic		NC_000022.10:g.(?_ 28587121)_(2860765 7_?)del	GRCh37 (hg19)		NC_000022.10	Chr22	28,587,121	28,607,657
nssv15648231	Submitted genomic		NC_000022.10:g.(?_ 28587121)_(2860765 7_?)del	GRCh37 (hg19)		NC_000022.10	Chr22	28,587,121	28,607,657
nssv15679258	Submitted genomic		NC_000022.10:g.(?_ 28587121)_(2860765 7_?)del	GRCh37 (hg19)		NC_000022.10	Chr22	28,587,121	28,607,657
nssv15694277	Submitted genomic		NC_000022.10:g.(?_ 28587121)_(2860765 7_?)del	GRCh37 (hg19)		NC_000022.10	Chr22	28,587,121	28,607,657

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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