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dbVar

Database of genomic structural variation

nsv4368890

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:4
Validation:Not tested
Clinical Assertions: No
Region Size:70,178

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 609 SVs from 83 studies. See in: genome view

Remapped(Score: Perfect):8,804,567-8,874,744

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4368890	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000007.14	Chr7	8,804,567	8,874,744
nsv4368890	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000007.13	Chr7	8,844,197	8,914,374

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15622105	copy number loss	1-1048-003	SNP array	Genotyping	21
nssv15634950	copy number loss	12-4425-002	SNP array	Genotyping	26
nssv15634989	copy number loss	12-4425-005	SNP array	Genotyping	24
nssv15635445	copy number loss	12-4425-004	SNP array	Genotyping	22

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15622105	Remapped	Perfect	NC_000007.14:g.(?_ 8804567)_(8874744_ ?)del	GRCh38.p12	First Pass	NC_000007.14	Chr7	8,804,567	8,874,744
nssv15634950	Remapped	Perfect	NC_000007.14:g.(?_ 8804567)_(8874744_ ?)del	GRCh38.p12	First Pass	NC_000007.14	Chr7	8,804,567	8,874,744
nssv15634989	Remapped	Perfect	NC_000007.14:g.(?_ 8804567)_(8874744_ ?)del	GRCh38.p12	First Pass	NC_000007.14	Chr7	8,804,567	8,874,744
nssv15635445	Remapped	Perfect	NC_000007.14:g.(?_ 8804567)_(8874744_ ?)del	GRCh38.p12	First Pass	NC_000007.14	Chr7	8,804,567	8,874,744
nssv15622105	Submitted genomic		NC_000007.13:g.(?_ 8844197)_(8914374_ ?)del	GRCh37 (hg19)		NC_000007.13	Chr7	8,844,197	8,914,374
nssv15634950	Submitted genomic		NC_000007.13:g.(?_ 8844197)_(8914374_ ?)del	GRCh37 (hg19)		NC_000007.13	Chr7	8,844,197	8,914,374
nssv15634989	Submitted genomic		NC_000007.13:g.(?_ 8844197)_(8914374_ ?)del	GRCh37 (hg19)		NC_000007.13	Chr7	8,844,197	8,914,374
nssv15635445	Submitted genomic		NC_000007.13:g.(?_ 8844197)_(8914374_ ?)del	GRCh37 (hg19)		NC_000007.13	Chr7	8,844,197	8,914,374

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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