nsv4368940

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:13
Validation:Not tested
Clinical Assertions: No
Region Size:42,739

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1260 SVs from 89 studies. See in: genome view

Remapped(Score: Perfect):17,602,503-17,645,241

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4368940	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	17,602,503	17,645,241
nsv4368940	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000005.9	Chr5	17,602,612	17,645,350

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15613150	copy number loss	1-0677-001	SNP array	Genotyping	26
nssv15615459	copy number loss	1-0774-003	SNP array	Genotyping	21
nssv15623083	copy number loss	1-1052-003	SNP array	Genotyping	23
nssv15626426	copy number loss	1-0439-002	SNP array	Genotyping	14
nssv15628378	copy number loss	1-0517-008	SNP array	Genotyping	19
nssv15628435	copy number loss	1-0517-009	SNP array	Genotyping	17
nssv15632066	copy number loss	10-0009-002	SNP array	Genotyping	21
nssv15658263	copy number loss	4-0026-001	SNP array	Genotyping	17
nssv15664759	copy number loss	5-0008-001	SNP array	Genotyping	22
nssv15697015	copy number loss	127819	SNP array	Genotyping	19
nssv15700573	copy number loss	158448	SNP array	Genotyping	23
nssv15700992	copy number loss	178904	SNP array	Genotyping	18
nssv15701760	copy number loss	183055	SNP array	Genotyping	21

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15613150	Remapped	Perfect	NC_000005.10:g.(?_ 17602503)_(1764524 1_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,602,503	17,645,241
nssv15615459	Remapped	Perfect	NC_000005.10:g.(?_ 17602503)_(1764524 1_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,602,503	17,645,241
nssv15623083	Remapped	Perfect	NC_000005.10:g.(?_ 17602503)_(1764524 1_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,602,503	17,645,241
nssv15626426	Remapped	Perfect	NC_000005.10:g.(?_ 17602503)_(1764524 1_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,602,503	17,645,241
nssv15628378	Remapped	Perfect	NC_000005.10:g.(?_ 17602503)_(1764524 1_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,602,503	17,645,241
nssv15628435	Remapped	Perfect	NC_000005.10:g.(?_ 17602503)_(1764524 1_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,602,503	17,645,241
nssv15632066	Remapped	Perfect	NC_000005.10:g.(?_ 17602503)_(1764524 1_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,602,503	17,645,241
nssv15658263	Remapped	Perfect	NC_000005.10:g.(?_ 17602503)_(1764524 1_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,602,503	17,645,241
nssv15664759	Remapped	Perfect	NC_000005.10:g.(?_ 17602503)_(1764524 1_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,602,503	17,645,241
nssv15697015	Remapped	Perfect	NC_000005.10:g.(?_ 17602503)_(1764524 1_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,602,503	17,645,241
nssv15700573	Remapped	Perfect	NC_000005.10:g.(?_ 17602503)_(1764524 1_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,602,503	17,645,241
nssv15700992	Remapped	Perfect	NC_000005.10:g.(?_ 17602503)_(1764524 1_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,602,503	17,645,241
nssv15701760	Remapped	Perfect	NC_000005.10:g.(?_ 17602503)_(1764524 1_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	17,602,503	17,645,241
nssv15613150	Submitted genomic		NC_000005.9:g.(?_1 7602612)_(17645350 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,602,612	17,645,350
nssv15615459	Submitted genomic		NC_000005.9:g.(?_1 7602612)_(17645350 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,602,612	17,645,350
nssv15623083	Submitted genomic		NC_000005.9:g.(?_1 7602612)_(17645350 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,602,612	17,645,350
nssv15626426	Submitted genomic		NC_000005.9:g.(?_1 7602612)_(17645350 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,602,612	17,645,350
nssv15628378	Submitted genomic		NC_000005.9:g.(?_1 7602612)_(17645350 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,602,612	17,645,350
nssv15628435	Submitted genomic		NC_000005.9:g.(?_1 7602612)_(17645350 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,602,612	17,645,350
nssv15632066	Submitted genomic		NC_000005.9:g.(?_1 7602612)_(17645350 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,602,612	17,645,350
nssv15658263	Submitted genomic		NC_000005.9:g.(?_1 7602612)_(17645350 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,602,612	17,645,350
nssv15664759	Submitted genomic		NC_000005.9:g.(?_1 7602612)_(17645350 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,602,612	17,645,350
nssv15697015	Submitted genomic		NC_000005.9:g.(?_1 7602612)_(17645350 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,602,612	17,645,350
nssv15700573	Submitted genomic		NC_000005.9:g.(?_1 7602612)_(17645350 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,602,612	17,645,350
nssv15700992	Submitted genomic		NC_000005.9:g.(?_1 7602612)_(17645350 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,602,612	17,645,350
nssv15701760	Submitted genomic		NC_000005.9:g.(?_1 7602612)_(17645350 _?)del	GRCh37 (hg19)		NC_000005.9	Chr5	17,602,612	17,645,350

dbVar

Database of genomic structural variation

nsv4368940

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant