nsv4369128

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:35
Validation:Not tested
Clinical Assertions: No
Region Size:49,951

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1513 SVs from 88 studies. See in: genome view

Remapped(Score: Perfect):68,570,171-68,620,121

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4369128	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000004.12	Chr4	68,570,171	68,620,121
nsv4369128	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000004.11	Chr4	69,435,889	69,485,839

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15613898	copy number gain	1-0708-003	SNP array	Genotyping	22
nssv15616356	copy number gain	1-0819-003	SNP array	Genotyping	16
nssv15617140	copy number gain	1-0764-003	SNP array	Genotyping	30
nssv15619883	copy number gain	1-0912-001	SNP array	Genotyping	28
nssv15621366	copy number gain	1-1015-001	SNP array	Genotyping	21
nssv15654927	copy number gain	2-1631-003	SNP array	Genotyping	21
nssv15656771	copy number gain	3-0600-000	SNP array	Genotyping	23
nssv15659435	copy number gain	3-0731-000	SNP array	Genotyping	18
nssv15665536	copy number gain	7-0098-003	SNP array	Genotyping	18
nssv15670317	copy number gain	7-0292-004	SNP array	Genotyping	13
nssv15681499	copy number loss	OCD108-1634	SNP array	Genotyping	19
nssv15682383	copy number gain	OCD110-S_1652	SNP array	Genotyping	26
nssv15682840	copy number gain	OCD1156-S_HAM543	SNP array	Genotyping	13
nssv15683480	copy number gain	OCD124-B_188609	SNP array	Genotyping	22
nssv15683806	copy number gain	OCD13-S_896242	SNP array	Genotyping	29
nssv15685042	copy number loss	OCD158-KA-1463	SNP array	Genotyping	26
nssv15685314	copy number gain	OCD117-B_1699	SNP array	Genotyping	29
nssv15685406	copy number gain	OCD119-B_1726	SNP array	Genotyping	23
nssv15685456	copy number gain	OCD12-S_896222	SNP array	Genotyping	30
nssv15685485	copy number loss	OCD127-896972	SNP array	Genotyping	23
nssv15686287	copy number loss	OCD3-S_896083	SNP array	Genotyping	27
nssv15686330	copy number gain	OCD129-8961042	SNP array	Genotyping	23
nssv15686974	copy number loss	OCD38-S_0625-1127-1	SNP array	Genotyping	27
nssv15687011	copy number loss	OCD38-S_0625-1127-3	SNP array	Genotyping	22
nssv15687288	copy number loss	OCD4-S_896093	SNP array	Genotyping	26
nssv15687541	copy number loss	OCD163-896471	SNP array	Genotyping	25
nssv15689395	copy number loss	OCD1002-S_896873	SNP array	Genotyping	20
nssv15690029	copy number gain	OCD1163-0625-7948-2	SNP array	Genotyping	22
nssv15691701	copy number gain	OCD75-SB-1213	SNP array	Genotyping	18
nssv15691799	copy number gain	OCD8-S_896143	SNP array	Genotyping	27
nssv15692431	copy number gain	OCD61-PC-1273	SNP array	Genotyping	26
nssv15693164	copy number loss	OCD87-896882	SNP array	Genotyping	20
nssv15693521	copy number loss	OCD71-896303	SNP array	Genotyping	19
nssv15693896	copy number loss	OCD95-1055	SNP array	Genotyping	21
nssv15694242	copy number gain	OCD83-896813	SNP array	Genotyping	27

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15613898	Remapped	Perfect	NC_000004.12:g.(?_ 68570171)_(6862012 1_?)dup	GRCh38.p12	First Pass	NC_000004.12	Chr4	68,570,171	68,620,121
nssv15616356	Remapped	Perfect	NC_000004.12:g.(?_ 68570171)_(6862012 1_?)dup	GRCh38.p12	First Pass	NC_000004.12	Chr4	68,570,171	68,620,121
nssv15617140	Remapped	Perfect	NC_000004.12:g.(?_ 68570171)_(6862012 1_?)dup	GRCh38.p12	First Pass	NC_000004.12	Chr4	68,570,171	68,620,121
nssv15619883	Remapped	Perfect	NC_000004.12:g.(?_ 68570171)_(6862012 1_?)dup	GRCh38.p12	First Pass	NC_000004.12	Chr4	68,570,171	68,620,121
nssv15621366	Remapped	Perfect	NC_000004.12:g.(?_ 68570171)_(6862012 1_?)dup	GRCh38.p12	First Pass	NC_000004.12	Chr4	68,570,171	68,620,121
nssv15654927	Remapped	Perfect	NC_000004.12:g.(?_ 68570171)_(6862012 1_?)dup	GRCh38.p12	First Pass	NC_000004.12	Chr4	68,570,171	68,620,121
nssv15656771	Remapped	Perfect	NC_000004.12:g.(?_ 68570171)_(6862012 1_?)dup	GRCh38.p12	First Pass	NC_000004.12	Chr4	68,570,171	68,620,121
nssv15659435	Remapped	Perfect	NC_000004.12:g.(?_ 68570171)_(6862012 1_?)dup	GRCh38.p12	First Pass	NC_000004.12	Chr4	68,570,171	68,620,121
nssv15665536	Remapped	Perfect	NC_000004.12:g.(?_ 68570171)_(6862012 1_?)dup	GRCh38.p12	First Pass	NC_000004.12	Chr4	68,570,171	68,620,121
nssv15670317	Remapped	Perfect	NC_000004.12:g.(?_ 68570171)_(6862012 1_?)dup	GRCh38.p12	First Pass	NC_000004.12	Chr4	68,570,171	68,620,121
nssv15681499	Remapped	Perfect	NC_000004.12:g.(?_ 68570171)_(6862012 1_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	68,570,171	68,620,121
nssv15682383	Remapped	Perfect	NC_000004.12:g.(?_ 68570171)_(6862012 1_?)dup	GRCh38.p12	First Pass	NC_000004.12	Chr4	68,570,171	68,620,121
nssv15682840	Remapped	Perfect	NC_000004.12:g.(?_ 68570171)_(6862012 1_?)dup	GRCh38.p12	First Pass	NC_000004.12	Chr4	68,570,171	68,620,121
nssv15683480	Remapped	Perfect	NC_000004.12:g.(?_ 68570171)_(6862012 1_?)dup	GRCh38.p12	First Pass	NC_000004.12	Chr4	68,570,171	68,620,121
nssv15683806	Remapped	Perfect	NC_000004.12:g.(?_ 68570171)_(6862012 1_?)dup	GRCh38.p12	First Pass	NC_000004.12	Chr4	68,570,171	68,620,121
nssv15685042	Remapped	Perfect	NC_000004.12:g.(?_ 68570171)_(6862012 1_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	68,570,171	68,620,121
nssv15685314	Remapped	Perfect	NC_000004.12:g.(?_ 68570171)_(6862012 1_?)dup	GRCh38.p12	First Pass	NC_000004.12	Chr4	68,570,171	68,620,121
nssv15685406	Remapped	Perfect	NC_000004.12:g.(?_ 68570171)_(6862012 1_?)dup	GRCh38.p12	First Pass	NC_000004.12	Chr4	68,570,171	68,620,121
nssv15685456	Remapped	Perfect	NC_000004.12:g.(?_ 68570171)_(6862012 1_?)dup	GRCh38.p12	First Pass	NC_000004.12	Chr4	68,570,171	68,620,121
nssv15685485	Remapped	Perfect	NC_000004.12:g.(?_ 68570171)_(6862012 1_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	68,570,171	68,620,121
nssv15686287	Remapped	Perfect	NC_000004.12:g.(?_ 68570171)_(6862012 1_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	68,570,171	68,620,121
nssv15686330	Remapped	Perfect	NC_000004.12:g.(?_ 68570171)_(6862012 1_?)dup	GRCh38.p12	First Pass	NC_000004.12	Chr4	68,570,171	68,620,121
nssv15686974	Remapped	Perfect	NC_000004.12:g.(?_ 68570171)_(6862012 1_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	68,570,171	68,620,121
nssv15687011	Remapped	Perfect	NC_000004.12:g.(?_ 68570171)_(6862012 1_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	68,570,171	68,620,121
nssv15687288	Remapped	Perfect	NC_000004.12:g.(?_ 68570171)_(6862012 1_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	68,570,171	68,620,121
nssv15687541	Remapped	Perfect	NC_000004.12:g.(?_ 68570171)_(6862012 1_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	68,570,171	68,620,121
nssv15689395	Remapped	Perfect	NC_000004.12:g.(?_ 68570171)_(6862012 1_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	68,570,171	68,620,121
nssv15690029	Remapped	Perfect	NC_000004.12:g.(?_ 68570171)_(6862012 1_?)dup	GRCh38.p12	First Pass	NC_000004.12	Chr4	68,570,171	68,620,121
nssv15691701	Remapped	Perfect	NC_000004.12:g.(?_ 68570171)_(6862012 1_?)dup	GRCh38.p12	First Pass	NC_000004.12	Chr4	68,570,171	68,620,121
nssv15691799	Remapped	Perfect	NC_000004.12:g.(?_ 68570171)_(6862012 1_?)dup	GRCh38.p12	First Pass	NC_000004.12	Chr4	68,570,171	68,620,121
nssv15692431	Remapped	Perfect	NC_000004.12:g.(?_ 68570171)_(6862012 1_?)dup	GRCh38.p12	First Pass	NC_000004.12	Chr4	68,570,171	68,620,121
nssv15693164	Remapped	Perfect	NC_000004.12:g.(?_ 68570171)_(6862012 1_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	68,570,171	68,620,121
nssv15693521	Remapped	Perfect	NC_000004.12:g.(?_ 68570171)_(6862012 1_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	68,570,171	68,620,121
nssv15693896	Remapped	Perfect	NC_000004.12:g.(?_ 68570171)_(6862012 1_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	68,570,171	68,620,121
nssv15694242	Remapped	Perfect	NC_000004.12:g.(?_ 68570171)_(6862012 1_?)dup	GRCh38.p12	First Pass	NC_000004.12	Chr4	68,570,171	68,620,121
nssv15613898	Submitted genomic		NC_000004.11:g.(?_ 69435889)_(6948583 9_?)dup	GRCh37 (hg19)		NC_000004.11	Chr4	69,435,889	69,485,839
nssv15616356	Submitted genomic		NC_000004.11:g.(?_ 69435889)_(6948583 9_?)dup	GRCh37 (hg19)		NC_000004.11	Chr4	69,435,889	69,485,839
nssv15617140	Submitted genomic		NC_000004.11:g.(?_ 69435889)_(6948583 9_?)dup	GRCh37 (hg19)		NC_000004.11	Chr4	69,435,889	69,485,839
nssv15619883	Submitted genomic		NC_000004.11:g.(?_ 69435889)_(6948583 9_?)dup	GRCh37 (hg19)		NC_000004.11	Chr4	69,435,889	69,485,839
nssv15621366	Submitted genomic		NC_000004.11:g.(?_ 69435889)_(6948583 9_?)dup	GRCh37 (hg19)		NC_000004.11	Chr4	69,435,889	69,485,839
nssv15654927	Submitted genomic		NC_000004.11:g.(?_ 69435889)_(6948583 9_?)dup	GRCh37 (hg19)		NC_000004.11	Chr4	69,435,889	69,485,839
nssv15656771	Submitted genomic		NC_000004.11:g.(?_ 69435889)_(6948583 9_?)dup	GRCh37 (hg19)		NC_000004.11	Chr4	69,435,889	69,485,839
nssv15659435	Submitted genomic		NC_000004.11:g.(?_ 69435889)_(6948583 9_?)dup	GRCh37 (hg19)		NC_000004.11	Chr4	69,435,889	69,485,839
nssv15665536	Submitted genomic		NC_000004.11:g.(?_ 69435889)_(6948583 9_?)dup	GRCh37 (hg19)		NC_000004.11	Chr4	69,435,889	69,485,839
nssv15670317	Submitted genomic		NC_000004.11:g.(?_ 69435889)_(6948583 9_?)dup	GRCh37 (hg19)		NC_000004.11	Chr4	69,435,889	69,485,839
nssv15681499	Submitted genomic		NC_000004.11:g.(?_ 69435889)_(6948583 9_?)del	GRCh37 (hg19)		NC_000004.11	Chr4	69,435,889	69,485,839
nssv15682383	Submitted genomic		NC_000004.11:g.(?_ 69435889)_(6948583 9_?)dup	GRCh37 (hg19)		NC_000004.11	Chr4	69,435,889	69,485,839
nssv15682840	Submitted genomic		NC_000004.11:g.(?_ 69435889)_(6948583 9_?)dup	GRCh37 (hg19)		NC_000004.11	Chr4	69,435,889	69,485,839
nssv15683480	Submitted genomic		NC_000004.11:g.(?_ 69435889)_(6948583 9_?)dup	GRCh37 (hg19)		NC_000004.11	Chr4	69,435,889	69,485,839
nssv15683806	Submitted genomic		NC_000004.11:g.(?_ 69435889)_(6948583 9_?)dup	GRCh37 (hg19)		NC_000004.11	Chr4	69,435,889	69,485,839
nssv15685042	Submitted genomic		NC_000004.11:g.(?_ 69435889)_(6948583 9_?)del	GRCh37 (hg19)		NC_000004.11	Chr4	69,435,889	69,485,839
nssv15685314	Submitted genomic		NC_000004.11:g.(?_ 69435889)_(6948583 9_?)dup	GRCh37 (hg19)		NC_000004.11	Chr4	69,435,889	69,485,839
nssv15685406	Submitted genomic		NC_000004.11:g.(?_ 69435889)_(6948583 9_?)dup	GRCh37 (hg19)		NC_000004.11	Chr4	69,435,889	69,485,839
nssv15685456	Submitted genomic		NC_000004.11:g.(?_ 69435889)_(6948583 9_?)dup	GRCh37 (hg19)		NC_000004.11	Chr4	69,435,889	69,485,839
nssv15685485	Submitted genomic		NC_000004.11:g.(?_ 69435889)_(6948583 9_?)del	GRCh37 (hg19)		NC_000004.11	Chr4	69,435,889	69,485,839
nssv15686287	Submitted genomic		NC_000004.11:g.(?_ 69435889)_(6948583 9_?)del	GRCh37 (hg19)		NC_000004.11	Chr4	69,435,889	69,485,839
nssv15686330	Submitted genomic		NC_000004.11:g.(?_ 69435889)_(6948583 9_?)dup	GRCh37 (hg19)		NC_000004.11	Chr4	69,435,889	69,485,839
nssv15686974	Submitted genomic		NC_000004.11:g.(?_ 69435889)_(6948583 9_?)del	GRCh37 (hg19)		NC_000004.11	Chr4	69,435,889	69,485,839
nssv15687011	Submitted genomic		NC_000004.11:g.(?_ 69435889)_(6948583 9_?)del	GRCh37 (hg19)		NC_000004.11	Chr4	69,435,889	69,485,839
nssv15687288	Submitted genomic		NC_000004.11:g.(?_ 69435889)_(6948583 9_?)del	GRCh37 (hg19)		NC_000004.11	Chr4	69,435,889	69,485,839
nssv15687541	Submitted genomic		NC_000004.11:g.(?_ 69435889)_(6948583 9_?)del	GRCh37 (hg19)		NC_000004.11	Chr4	69,435,889	69,485,839
nssv15689395	Submitted genomic		NC_000004.11:g.(?_ 69435889)_(6948583 9_?)del	GRCh37 (hg19)		NC_000004.11	Chr4	69,435,889	69,485,839
nssv15690029	Submitted genomic		NC_000004.11:g.(?_ 69435889)_(6948583 9_?)dup	GRCh37 (hg19)		NC_000004.11	Chr4	69,435,889	69,485,839
nssv15691701	Submitted genomic		NC_000004.11:g.(?_ 69435889)_(6948583 9_?)dup	GRCh37 (hg19)		NC_000004.11	Chr4	69,435,889	69,485,839
nssv15691799	Submitted genomic		NC_000004.11:g.(?_ 69435889)_(6948583 9_?)dup	GRCh37 (hg19)		NC_000004.11	Chr4	69,435,889	69,485,839
nssv15692431	Submitted genomic		NC_000004.11:g.(?_ 69435889)_(6948583 9_?)dup	GRCh37 (hg19)		NC_000004.11	Chr4	69,435,889	69,485,839
nssv15693164	Submitted genomic		NC_000004.11:g.(?_ 69435889)_(6948583 9_?)del	GRCh37 (hg19)		NC_000004.11	Chr4	69,435,889	69,485,839
nssv15693521	Submitted genomic		NC_000004.11:g.(?_ 69435889)_(6948583 9_?)del	GRCh37 (hg19)		NC_000004.11	Chr4	69,435,889	69,485,839
nssv15693896	Submitted genomic		NC_000004.11:g.(?_ 69435889)_(6948583 9_?)del	GRCh37 (hg19)		NC_000004.11	Chr4	69,435,889	69,485,839
nssv15694242	Submitted genomic		NC_000004.11:g.(?_ 69435889)_(6948583 9_?)dup	GRCh37 (hg19)		NC_000004.11	Chr4	69,435,889	69,485,839

dbVar

Database of genomic structural variation

nsv4369128

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant