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dbVar

Database of genomic structural variation

nsv4369336

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:4
Validation:Not tested
Clinical Assertions: No
Region Size:45,120

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1258 SVs from 86 studies. See in: genome view

Remapped(Score: Perfect):257,065-302,184

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4369336	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000006.12	Chr6	257,065	302,184
nsv4369336	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000006.11	Chr6	257,065	302,184

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15617068	copy number loss	1-0857-003	SNP array	Genotyping	14
nssv15664875	copy number loss	6-0451-003	SNP array	Genotyping	28
nssv15678324	copy number gain	192217	SNP array	Genotyping	19
nssv15696248	copy number loss	157170	SNP array	Genotyping	15

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15617068	Remapped	Perfect	NC_000006.12:g.(?_ 257065)_(302184_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,065	302,184
nssv15664875	Remapped	Perfect	NC_000006.12:g.(?_ 257065)_(302184_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,065	302,184
nssv15678324	Remapped	Perfect	NC_000006.12:g.(?_ 257065)_(302184_?) dup	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,065	302,184
nssv15696248	Remapped	Perfect	NC_000006.12:g.(?_ 257065)_(302184_?) del	GRCh38.p12	First Pass	NC_000006.12	Chr6	257,065	302,184
nssv15617068	Submitted genomic		NC_000006.11:g.(?_ 257065)_(302184_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,065	302,184
nssv15664875	Submitted genomic		NC_000006.11:g.(?_ 257065)_(302184_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,065	302,184
nssv15678324	Submitted genomic		NC_000006.11:g.(?_ 257065)_(302184_?) dup	GRCh37 (hg19)		NC_000006.11	Chr6	257,065	302,184
nssv15696248	Submitted genomic		NC_000006.11:g.(?_ 257065)_(302184_?) del	GRCh37 (hg19)		NC_000006.11	Chr6	257,065	302,184

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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