nsv4369656
- Organism: Homo sapiens
- Study:nstd173 (Zarrei et al. 2019)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:16
- Validation:Not tested
- Clinical Assertions: No
- Region Size:24,336
- Publication(s):Zarrei et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 525 SVs from 67 studies. See in: genome view
Overlapping variant regions from other studies: 525 SVs from 67 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4369656 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 9,901,840 | 9,926,175 |
| nsv4369656 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000005.9 | Chr5 | 9,901,952 | 9,926,287 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv15613384 | copy number loss | 1-0702-003 | SNP array | Genotyping | 17 |
| nssv15614859 | copy number loss | 1-0757-003 | SNP array | Genotyping | 22 |
| nssv15621191 | copy number loss | 1-0982-003 | SNP array | Genotyping | 27 |
| nssv15630100 | copy number loss | 1-0632-004 | SNP array | Genotyping | 19 |
| nssv15631160 | copy number loss | 1-0604-003 | SNP array | Genotyping | 27 |
| nssv15637761 | copy number loss | 14-0170-002 | SNP array | Genotyping | 30 |
| nssv15637803 | copy number loss | 14-0170-004 | SNP array | Genotyping | 19 |
| nssv15643527 | copy number loss | 16-1013-002 | SNP array | Genotyping | 27 |
| nssv15646475 | copy number loss | 2-1189-001 | SNP array | Genotyping | 19 |
| nssv15646626 | copy number loss | 2-1272-001 | SNP array | Genotyping | 11 |
| nssv15651874 | copy number loss | 2-1579-003 | SNP array | Genotyping | 18 |
| nssv15669027 | copy number loss | 7-0106-003 | SNP array | Genotyping | 17 |
| nssv15670932 | copy number loss | 7-0286-003 | SNP array | Genotyping | 20 |
| nssv15671515 | copy number loss | 7-0309-003 | SNP array | Genotyping | 21 |
| nssv15696073 | copy number loss | 155362 | SNP array | Genotyping | 22 |
| nssv15699670 | copy number loss | 214748 | SNP array | Genotyping | 20 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15613384 | Remapped | Perfect | NC_000005.10:g.(?_ 9901840)_(9926175_ ?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 9,901,840 | 9,926,175 |
| nssv15614859 | Remapped | Perfect | NC_000005.10:g.(?_ 9901840)_(9926175_ ?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 9,901,840 | 9,926,175 |
| nssv15621191 | Remapped | Perfect | NC_000005.10:g.(?_ 9901840)_(9926175_ ?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 9,901,840 | 9,926,175 |
| nssv15630100 | Remapped | Perfect | NC_000005.10:g.(?_ 9901840)_(9926175_ ?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 9,901,840 | 9,926,175 |
| nssv15631160 | Remapped | Perfect | NC_000005.10:g.(?_ 9901840)_(9926175_ ?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 9,901,840 | 9,926,175 |
| nssv15637761 | Remapped | Perfect | NC_000005.10:g.(?_ 9901840)_(9926175_ ?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 9,901,840 | 9,926,175 |
| nssv15637803 | Remapped | Perfect | NC_000005.10:g.(?_ 9901840)_(9926175_ ?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 9,901,840 | 9,926,175 |
| nssv15643527 | Remapped | Perfect | NC_000005.10:g.(?_ 9901840)_(9926175_ ?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 9,901,840 | 9,926,175 |
| nssv15646475 | Remapped | Perfect | NC_000005.10:g.(?_ 9901840)_(9926175_ ?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 9,901,840 | 9,926,175 |
| nssv15646626 | Remapped | Perfect | NC_000005.10:g.(?_ 9901840)_(9926175_ ?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 9,901,840 | 9,926,175 |
| nssv15651874 | Remapped | Perfect | NC_000005.10:g.(?_ 9901840)_(9926175_ ?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 9,901,840 | 9,926,175 |
| nssv15669027 | Remapped | Perfect | NC_000005.10:g.(?_ 9901840)_(9926175_ ?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 9,901,840 | 9,926,175 |
| nssv15670932 | Remapped | Perfect | NC_000005.10:g.(?_ 9901840)_(9926175_ ?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 9,901,840 | 9,926,175 |
| nssv15671515 | Remapped | Perfect | NC_000005.10:g.(?_ 9901840)_(9926175_ ?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 9,901,840 | 9,926,175 |
| nssv15696073 | Remapped | Perfect | NC_000005.10:g.(?_ 9901840)_(9926175_ ?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 9,901,840 | 9,926,175 |
| nssv15699670 | Remapped | Perfect | NC_000005.10:g.(?_ 9901840)_(9926175_ ?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 9,901,840 | 9,926,175 |
| nssv15613384 | Submitted genomic | NC_000005.9:g.(?_9 901952)_(9926287_? )del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 9,901,952 | 9,926,287 | ||
| nssv15614859 | Submitted genomic | NC_000005.9:g.(?_9 901952)_(9926287_? )del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 9,901,952 | 9,926,287 | ||
| nssv15621191 | Submitted genomic | NC_000005.9:g.(?_9 901952)_(9926287_? )del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 9,901,952 | 9,926,287 | ||
| nssv15630100 | Submitted genomic | NC_000005.9:g.(?_9 901952)_(9926287_? )del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 9,901,952 | 9,926,287 | ||
| nssv15631160 | Submitted genomic | NC_000005.9:g.(?_9 901952)_(9926287_? )del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 9,901,952 | 9,926,287 | ||
| nssv15637761 | Submitted genomic | NC_000005.9:g.(?_9 901952)_(9926287_? )del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 9,901,952 | 9,926,287 | ||
| nssv15637803 | Submitted genomic | NC_000005.9:g.(?_9 901952)_(9926287_? )del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 9,901,952 | 9,926,287 | ||
| nssv15643527 | Submitted genomic | NC_000005.9:g.(?_9 901952)_(9926287_? )del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 9,901,952 | 9,926,287 | ||
| nssv15646475 | Submitted genomic | NC_000005.9:g.(?_9 901952)_(9926287_? )del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 9,901,952 | 9,926,287 | ||
| nssv15646626 | Submitted genomic | NC_000005.9:g.(?_9 901952)_(9926287_? )del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 9,901,952 | 9,926,287 | ||
| nssv15651874 | Submitted genomic | NC_000005.9:g.(?_9 901952)_(9926287_? )del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 9,901,952 | 9,926,287 | ||
| nssv15669027 | Submitted genomic | NC_000005.9:g.(?_9 901952)_(9926287_? )del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 9,901,952 | 9,926,287 | ||
| nssv15670932 | Submitted genomic | NC_000005.9:g.(?_9 901952)_(9926287_? )del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 9,901,952 | 9,926,287 | ||
| nssv15671515 | Submitted genomic | NC_000005.9:g.(?_9 901952)_(9926287_? )del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 9,901,952 | 9,926,287 | ||
| nssv15696073 | Submitted genomic | NC_000005.9:g.(?_9 901952)_(9926287_? )del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 9,901,952 | 9,926,287 | ||
| nssv15699670 | Submitted genomic | NC_000005.9:g.(?_9 901952)_(9926287_? )del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 9,901,952 | 9,926,287 |