Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv436984

Organism: Homo sapiens

Study:nstd17 (Conrad et al. 2005)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI34 (hg16)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:108,529

Publication(s):Conrad et al. 2005

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 973 SVs from 76 studies. See in: genome view

Remapped(Score: Perfect):105,089,919-105,198,447

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv436984	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	105,089,919	105,105,485	105,121,491	105,198,447
nsv436984	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000005.9	Chr5	104,425,620	104,441,186	104,457,192	104,534,148
nsv436984	Submitted genomic		NCBI34 (hg16)	Primary Assembly		NC_000005.7	Chr5	104,501,836	104,517,402	104,533,408	104,610,364

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Zygosity	Other Calls in this Sample and Study
nssv466865	copy number loss	NA12878	SNP array	SNP genotyping analysis	Heterozygous	12

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv466865	Remapped	Perfect	NC_000005.10:g.(10 5089919_105105485) _(105121491_105198 447)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	105,089,919	105,105,485	105,121,491	105,198,447
nssv466865	Remapped	Perfect	NC_000005.9:g.(104 425620_104441186)_ (104457192_1045341 48)del	GRCh37.p13	First Pass	NC_000005.9	Chr5	104,425,620	104,441,186	104,457,192	104,534,148
nssv466865	Submitted genomic		NC_000005.7:g.(104 501836_104517402)_ (104533408_1046103 64)del	NCBI34 (hg16)		NC_000005.7	Chr5	104,501,836	104,517,402	104,533,408	104,610,364

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

You are here: NCBI