nsv4370203
- Organism: Homo sapiens
- Study:nstd173 (Zarrei et al. 2019)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:26
- Validation:Not tested
- Clinical Assertions: No
- Region Size:76,922
- Publication(s):Zarrei et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1293 SVs from 95 studies. See in: genome view
Overlapping variant regions from other studies: 1293 SVs from 95 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4370203 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000016.10 | Chr16 | 14,956,112 | 15,033,033 |
| nsv4370203 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000016.9 | Chr16 | 15,049,969 | 15,126,890 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv15611811 | copy number loss | 1-0656-001 | SNP array | Genotyping | 18 |
| nssv15613603 | copy number loss | 1-0700-004 | SNP array | Genotyping | 20 |
| nssv15614170 | copy number loss | 1-0700-003 | SNP array | Genotyping | 26 |
| nssv15614308 | copy number loss | 1-0742-003 | SNP array | Genotyping | 12 |
| nssv15615886 | copy number gain | 1-0788-003 | SNP array | Genotyping | 21 |
| nssv15617263 | copy number loss | 1-0831-003 | SNP array | Genotyping | 17 |
| nssv15620351 | copy number loss | 1-0963-003 | SNP array | Genotyping | 15 |
| nssv15621276 | copy number loss | 1-1011-003 | SNP array | Genotyping | 19 |
| nssv15622925 | copy number loss | 1-0025-005 | SNP array | Genotyping | 19 |
| nssv15624153 | copy number loss | 1-0261-004 | SNP array | Genotyping | 26 |
| nssv15626479 | copy number loss | 1-0441-001 | SNP array | Genotyping | 19 |
| nssv15630801 | copy number loss | 1-0625-004 | SNP array | Genotyping | 15 |
| nssv15652299 | copy number loss | 2-1559-001 | SNP array | Genotyping | 20 |
| nssv15653424 | copy number loss | 2-1559-003 | SNP array | Genotyping | 21 |
| nssv15653445 | copy number loss | 2-1559-004 | SNP array | Genotyping | 18 |
| nssv15656312 | copy number loss | 4-0001-005 | SNP array | Genotyping | 17 |
| nssv15658596 | copy number loss | 3-0539-000 | SNP array | Genotyping | 18 |
| nssv15662820 | copy number loss | 5-0139-001 | SNP array | Genotyping | 30 |
| nssv15664008 | copy number loss | 5-0147-003 | SNP array | Genotyping | 19 |
| nssv15669884 | copy number loss | 7-0253-005 | SNP array | Genotyping | 19 |
| nssv15671693 | copy number loss | 9-0004-003 | SNP array | Genotyping | 22 |
| nssv15672131 | copy number loss | 9-0014-002 | SNP array | Genotyping | 21 |
| nssv15672418 | copy number loss | 9-0004-002 | SNP array | Genotyping | 15 |
| nssv15672500 | copy number loss | 9-0007-001 | SNP array | Genotyping | 28 |
| nssv15685758 | copy number loss | OCD179-DN-1761 | SNP array | Genotyping | 25 |
| nssv15696971 | copy number loss | 125921 | SNP array | Genotyping | 18 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15611811 | Remapped | Perfect | NC_000016.10:g.(?_ 14956112)_(1503303 3_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 14,956,112 | 15,033,033 |
| nssv15613603 | Remapped | Perfect | NC_000016.10:g.(?_ 14956112)_(1503303 3_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 14,956,112 | 15,033,033 |
| nssv15614170 | Remapped | Perfect | NC_000016.10:g.(?_ 14956112)_(1503303 3_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 14,956,112 | 15,033,033 |
| nssv15614308 | Remapped | Perfect | NC_000016.10:g.(?_ 14956112)_(1503303 3_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 14,956,112 | 15,033,033 |
| nssv15615886 | Remapped | Perfect | NC_000016.10:g.(?_ 14956112)_(1503303 3_?)dup | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 14,956,112 | 15,033,033 |
| nssv15617263 | Remapped | Perfect | NC_000016.10:g.(?_ 14956112)_(1503303 3_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 14,956,112 | 15,033,033 |
| nssv15620351 | Remapped | Perfect | NC_000016.10:g.(?_ 14956112)_(1503303 3_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 14,956,112 | 15,033,033 |
| nssv15621276 | Remapped | Perfect | NC_000016.10:g.(?_ 14956112)_(1503303 3_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 14,956,112 | 15,033,033 |
| nssv15622925 | Remapped | Perfect | NC_000016.10:g.(?_ 14956112)_(1503303 3_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 14,956,112 | 15,033,033 |
| nssv15624153 | Remapped | Perfect | NC_000016.10:g.(?_ 14956112)_(1503303 3_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 14,956,112 | 15,033,033 |
| nssv15626479 | Remapped | Perfect | NC_000016.10:g.(?_ 14956112)_(1503303 3_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 14,956,112 | 15,033,033 |
| nssv15630801 | Remapped | Perfect | NC_000016.10:g.(?_ 14956112)_(1503303 3_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 14,956,112 | 15,033,033 |
| nssv15652299 | Remapped | Perfect | NC_000016.10:g.(?_ 14956112)_(1503303 3_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 14,956,112 | 15,033,033 |
| nssv15653424 | Remapped | Perfect | NC_000016.10:g.(?_ 14956112)_(1503303 3_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 14,956,112 | 15,033,033 |
| nssv15653445 | Remapped | Perfect | NC_000016.10:g.(?_ 14956112)_(1503303 3_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 14,956,112 | 15,033,033 |
| nssv15656312 | Remapped | Perfect | NC_000016.10:g.(?_ 14956112)_(1503303 3_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 14,956,112 | 15,033,033 |
| nssv15658596 | Remapped | Perfect | NC_000016.10:g.(?_ 14956112)_(1503303 3_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 14,956,112 | 15,033,033 |
| nssv15662820 | Remapped | Perfect | NC_000016.10:g.(?_ 14956112)_(1503303 3_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 14,956,112 | 15,033,033 |
| nssv15664008 | Remapped | Perfect | NC_000016.10:g.(?_ 14956112)_(1503303 3_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 14,956,112 | 15,033,033 |
| nssv15669884 | Remapped | Perfect | NC_000016.10:g.(?_ 14956112)_(1503303 3_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 14,956,112 | 15,033,033 |
| nssv15671693 | Remapped | Perfect | NC_000016.10:g.(?_ 14956112)_(1503303 3_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 14,956,112 | 15,033,033 |
| nssv15672131 | Remapped | Perfect | NC_000016.10:g.(?_ 14956112)_(1503303 3_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 14,956,112 | 15,033,033 |
| nssv15672418 | Remapped | Perfect | NC_000016.10:g.(?_ 14956112)_(1503303 3_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 14,956,112 | 15,033,033 |
| nssv15672500 | Remapped | Perfect | NC_000016.10:g.(?_ 14956112)_(1503303 3_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 14,956,112 | 15,033,033 |
| nssv15685758 | Remapped | Perfect | NC_000016.10:g.(?_ 14956112)_(1503303 3_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 14,956,112 | 15,033,033 |
| nssv15696971 | Remapped | Perfect | NC_000016.10:g.(?_ 14956112)_(1503303 3_?)del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 14,956,112 | 15,033,033 |
| nssv15611811 | Submitted genomic | NC_000016.9:g.(?_1 5049969)_(15126890 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 15,049,969 | 15,126,890 | ||
| nssv15613603 | Submitted genomic | NC_000016.9:g.(?_1 5049969)_(15126890 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 15,049,969 | 15,126,890 | ||
| nssv15614170 | Submitted genomic | NC_000016.9:g.(?_1 5049969)_(15126890 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 15,049,969 | 15,126,890 | ||
| nssv15614308 | Submitted genomic | NC_000016.9:g.(?_1 5049969)_(15126890 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 15,049,969 | 15,126,890 | ||
| nssv15615886 | Submitted genomic | NC_000016.9:g.(?_1 5049969)_(15126890 _?)dup | GRCh37 (hg19) | NC_000016.9 | Chr16 | 15,049,969 | 15,126,890 | ||
| nssv15617263 | Submitted genomic | NC_000016.9:g.(?_1 5049969)_(15126890 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 15,049,969 | 15,126,890 | ||
| nssv15620351 | Submitted genomic | NC_000016.9:g.(?_1 5049969)_(15126890 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 15,049,969 | 15,126,890 | ||
| nssv15621276 | Submitted genomic | NC_000016.9:g.(?_1 5049969)_(15126890 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 15,049,969 | 15,126,890 | ||
| nssv15622925 | Submitted genomic | NC_000016.9:g.(?_1 5049969)_(15126890 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 15,049,969 | 15,126,890 | ||
| nssv15624153 | Submitted genomic | NC_000016.9:g.(?_1 5049969)_(15126890 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 15,049,969 | 15,126,890 | ||
| nssv15626479 | Submitted genomic | NC_000016.9:g.(?_1 5049969)_(15126890 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 15,049,969 | 15,126,890 | ||
| nssv15630801 | Submitted genomic | NC_000016.9:g.(?_1 5049969)_(15126890 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 15,049,969 | 15,126,890 | ||
| nssv15652299 | Submitted genomic | NC_000016.9:g.(?_1 5049969)_(15126890 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 15,049,969 | 15,126,890 | ||
| nssv15653424 | Submitted genomic | NC_000016.9:g.(?_1 5049969)_(15126890 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 15,049,969 | 15,126,890 | ||
| nssv15653445 | Submitted genomic | NC_000016.9:g.(?_1 5049969)_(15126890 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 15,049,969 | 15,126,890 | ||
| nssv15656312 | Submitted genomic | NC_000016.9:g.(?_1 5049969)_(15126890 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 15,049,969 | 15,126,890 | ||
| nssv15658596 | Submitted genomic | NC_000016.9:g.(?_1 5049969)_(15126890 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 15,049,969 | 15,126,890 | ||
| nssv15662820 | Submitted genomic | NC_000016.9:g.(?_1 5049969)_(15126890 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 15,049,969 | 15,126,890 | ||
| nssv15664008 | Submitted genomic | NC_000016.9:g.(?_1 5049969)_(15126890 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 15,049,969 | 15,126,890 | ||
| nssv15669884 | Submitted genomic | NC_000016.9:g.(?_1 5049969)_(15126890 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 15,049,969 | 15,126,890 | ||
| nssv15671693 | Submitted genomic | NC_000016.9:g.(?_1 5049969)_(15126890 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 15,049,969 | 15,126,890 | ||
| nssv15672131 | Submitted genomic | NC_000016.9:g.(?_1 5049969)_(15126890 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 15,049,969 | 15,126,890 | ||
| nssv15672418 | Submitted genomic | NC_000016.9:g.(?_1 5049969)_(15126890 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 15,049,969 | 15,126,890 | ||
| nssv15672500 | Submitted genomic | NC_000016.9:g.(?_1 5049969)_(15126890 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 15,049,969 | 15,126,890 | ||
| nssv15685758 | Submitted genomic | NC_000016.9:g.(?_1 5049969)_(15126890 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 15,049,969 | 15,126,890 | ||
| nssv15696971 | Submitted genomic | NC_000016.9:g.(?_1 5049969)_(15126890 _?)del | GRCh37 (hg19) | NC_000016.9 | Chr16 | 15,049,969 | 15,126,890 |