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dbVar

Database of genomic structural variation

nsv4370275

Organism: Homo sapiens

Study:nstd173 (Zarrei et al. 2019)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:GRCh37 (hg19)

Variant Calls:5
Validation:Not tested
Clinical Assertions: No
Region Size:42,671

Publication(s):Zarrei et al. 2019

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 427 SVs from 73 studies. See in: genome view

Remapped(Score: Perfect):85,985,540-86,028,210

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv4370275	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000014.9	Chr14	85,985,540	86,028,210
nsv4370275	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000014.8	Chr14	86,451,884	86,494,554

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv15627237	copy number loss	1-0479-007	SNP array	Genotyping	21
nssv15653612	copy number loss	2-1605-002	SNP array	Genotyping	25
nssv15654614	copy number loss	2-1747-003	SNP array	Genotyping	20
nssv15663054	copy number loss	4-0049-003	SNP array	Genotyping	22
nssv15700862	copy number loss	217142	SNP array	Genotyping	27

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv15627237	Remapped	Perfect	NC_000014.9:g.(?_8 5985540)_(86028210 _?)del	GRCh38.p12	First Pass	NC_000014.9	Chr14	85,985,540	86,028,210
nssv15653612	Remapped	Perfect	NC_000014.9:g.(?_8 5985540)_(86028210 _?)del	GRCh38.p12	First Pass	NC_000014.9	Chr14	85,985,540	86,028,210
nssv15654614	Remapped	Perfect	NC_000014.9:g.(?_8 5985540)_(86028210 _?)del	GRCh38.p12	First Pass	NC_000014.9	Chr14	85,985,540	86,028,210
nssv15663054	Remapped	Perfect	NC_000014.9:g.(?_8 5985540)_(86028210 _?)del	GRCh38.p12	First Pass	NC_000014.9	Chr14	85,985,540	86,028,210
nssv15700862	Remapped	Perfect	NC_000014.9:g.(?_8 5985540)_(86028210 _?)del	GRCh38.p12	First Pass	NC_000014.9	Chr14	85,985,540	86,028,210
nssv15627237	Submitted genomic		NC_000014.8:g.(?_8 6451884)_(86494554 _?)del	GRCh37 (hg19)		NC_000014.8	Chr14	86,451,884	86,494,554
nssv15653612	Submitted genomic		NC_000014.8:g.(?_8 6451884)_(86494554 _?)del	GRCh37 (hg19)		NC_000014.8	Chr14	86,451,884	86,494,554
nssv15654614	Submitted genomic		NC_000014.8:g.(?_8 6451884)_(86494554 _?)del	GRCh37 (hg19)		NC_000014.8	Chr14	86,451,884	86,494,554
nssv15663054	Submitted genomic		NC_000014.8:g.(?_8 6451884)_(86494554 _?)del	GRCh37 (hg19)		NC_000014.8	Chr14	86,451,884	86,494,554
nssv15700862	Submitted genomic		NC_000014.8:g.(?_8 6451884)_(86494554 _?)del	GRCh37 (hg19)		NC_000014.8	Chr14	86,451,884	86,494,554

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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