nsv4370313
- Organism: Homo sapiens
- Study:nstd173 (Zarrei et al. 2019)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:16
- Validation:Not tested
- Clinical Assertions: No
- Region Size:49,788
- Publication(s):Zarrei et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 548 SVs from 81 studies. See in: genome view
Overlapping variant regions from other studies: 548 SVs from 81 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4370313 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 173,522,063 | 173,571,850 |
| nsv4370313 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000003.11 | Chr3 | 173,239,853 | 173,289,640 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv15619140 | copy number gain | 1-0927-003 | SNP array | Genotyping | 21 |
| nssv15626081 | copy number gain | 1-0432-001 | SNP array | Genotyping | 25 |
| nssv15628108 | copy number gain | 1-0534-004 | SNP array | Genotyping | 22 |
| nssv15631448 | copy number gain | 1-0627-006 | SNP array | Genotyping | 23 |
| nssv15648363 | copy number gain | 2-1288-003 | SNP array | Genotyping | 23 |
| nssv15651538 | copy number gain | 2-1452-003 | SNP array | Genotyping | 22 |
| nssv15656968 | copy number gain | 3-0668-000 | SNP array | Genotyping | 24 |
| nssv15657985 | copy number gain | 3-0466-000 | SNP array | Genotyping | 15 |
| nssv15664172 | copy number gain | 7-0037-003 | SNP array | Genotyping | 18 |
| nssv15665684 | copy number gain | 7-0084-003 | SNP array | Genotyping | 18 |
| nssv15666377 | copy number gain | 7-0076-003 | SNP array | Genotyping | 22 |
| nssv15689826 | copy number gain | OCD1150-S_HAM473 | SNP array | Genotyping | 24 |
| nssv15698060 | copy number gain | 79548 | SNP array | Genotyping | 16 |
| nssv15698187 | copy number gain | 127822 | SNP array | Genotyping | 26 |
| nssv15699028 | copy number gain | 188858 | SNP array | Genotyping | 23 |
| nssv15699430 | copy number gain | 102593 | SNP array | Genotyping | 19 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15619140 | Remapped | Perfect | NC_000003.12:g.(?_ 173522063)_(173571 850_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 173,522,063 | 173,571,850 |
| nssv15626081 | Remapped | Perfect | NC_000003.12:g.(?_ 173522063)_(173571 850_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 173,522,063 | 173,571,850 |
| nssv15628108 | Remapped | Perfect | NC_000003.12:g.(?_ 173522063)_(173571 850_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 173,522,063 | 173,571,850 |
| nssv15631448 | Remapped | Perfect | NC_000003.12:g.(?_ 173522063)_(173571 850_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 173,522,063 | 173,571,850 |
| nssv15648363 | Remapped | Perfect | NC_000003.12:g.(?_ 173522063)_(173571 850_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 173,522,063 | 173,571,850 |
| nssv15651538 | Remapped | Perfect | NC_000003.12:g.(?_ 173522063)_(173571 850_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 173,522,063 | 173,571,850 |
| nssv15656968 | Remapped | Perfect | NC_000003.12:g.(?_ 173522063)_(173571 850_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 173,522,063 | 173,571,850 |
| nssv15657985 | Remapped | Perfect | NC_000003.12:g.(?_ 173522063)_(173571 850_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 173,522,063 | 173,571,850 |
| nssv15664172 | Remapped | Perfect | NC_000003.12:g.(?_ 173522063)_(173571 850_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 173,522,063 | 173,571,850 |
| nssv15665684 | Remapped | Perfect | NC_000003.12:g.(?_ 173522063)_(173571 850_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 173,522,063 | 173,571,850 |
| nssv15666377 | Remapped | Perfect | NC_000003.12:g.(?_ 173522063)_(173571 850_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 173,522,063 | 173,571,850 |
| nssv15689826 | Remapped | Perfect | NC_000003.12:g.(?_ 173522063)_(173571 850_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 173,522,063 | 173,571,850 |
| nssv15698060 | Remapped | Perfect | NC_000003.12:g.(?_ 173522063)_(173571 850_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 173,522,063 | 173,571,850 |
| nssv15698187 | Remapped | Perfect | NC_000003.12:g.(?_ 173522063)_(173571 850_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 173,522,063 | 173,571,850 |
| nssv15699028 | Remapped | Perfect | NC_000003.12:g.(?_ 173522063)_(173571 850_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 173,522,063 | 173,571,850 |
| nssv15699430 | Remapped | Perfect | NC_000003.12:g.(?_ 173522063)_(173571 850_?)dup | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 173,522,063 | 173,571,850 |
| nssv15619140 | Submitted genomic | NC_000003.11:g.(?_ 173239853)_(173289 640_?)dup | GRCh37 (hg19) | NC_000003.11 | Chr3 | 173,239,853 | 173,289,640 | ||
| nssv15626081 | Submitted genomic | NC_000003.11:g.(?_ 173239853)_(173289 640_?)dup | GRCh37 (hg19) | NC_000003.11 | Chr3 | 173,239,853 | 173,289,640 | ||
| nssv15628108 | Submitted genomic | NC_000003.11:g.(?_ 173239853)_(173289 640_?)dup | GRCh37 (hg19) | NC_000003.11 | Chr3 | 173,239,853 | 173,289,640 | ||
| nssv15631448 | Submitted genomic | NC_000003.11:g.(?_ 173239853)_(173289 640_?)dup | GRCh37 (hg19) | NC_000003.11 | Chr3 | 173,239,853 | 173,289,640 | ||
| nssv15648363 | Submitted genomic | NC_000003.11:g.(?_ 173239853)_(173289 640_?)dup | GRCh37 (hg19) | NC_000003.11 | Chr3 | 173,239,853 | 173,289,640 | ||
| nssv15651538 | Submitted genomic | NC_000003.11:g.(?_ 173239853)_(173289 640_?)dup | GRCh37 (hg19) | NC_000003.11 | Chr3 | 173,239,853 | 173,289,640 | ||
| nssv15656968 | Submitted genomic | NC_000003.11:g.(?_ 173239853)_(173289 640_?)dup | GRCh37 (hg19) | NC_000003.11 | Chr3 | 173,239,853 | 173,289,640 | ||
| nssv15657985 | Submitted genomic | NC_000003.11:g.(?_ 173239853)_(173289 640_?)dup | GRCh37 (hg19) | NC_000003.11 | Chr3 | 173,239,853 | 173,289,640 | ||
| nssv15664172 | Submitted genomic | NC_000003.11:g.(?_ 173239853)_(173289 640_?)dup | GRCh37 (hg19) | NC_000003.11 | Chr3 | 173,239,853 | 173,289,640 | ||
| nssv15665684 | Submitted genomic | NC_000003.11:g.(?_ 173239853)_(173289 640_?)dup | GRCh37 (hg19) | NC_000003.11 | Chr3 | 173,239,853 | 173,289,640 | ||
| nssv15666377 | Submitted genomic | NC_000003.11:g.(?_ 173239853)_(173289 640_?)dup | GRCh37 (hg19) | NC_000003.11 | Chr3 | 173,239,853 | 173,289,640 | ||
| nssv15689826 | Submitted genomic | NC_000003.11:g.(?_ 173239853)_(173289 640_?)dup | GRCh37 (hg19) | NC_000003.11 | Chr3 | 173,239,853 | 173,289,640 | ||
| nssv15698060 | Submitted genomic | NC_000003.11:g.(?_ 173239853)_(173289 640_?)dup | GRCh37 (hg19) | NC_000003.11 | Chr3 | 173,239,853 | 173,289,640 | ||
| nssv15698187 | Submitted genomic | NC_000003.11:g.(?_ 173239853)_(173289 640_?)dup | GRCh37 (hg19) | NC_000003.11 | Chr3 | 173,239,853 | 173,289,640 | ||
| nssv15699028 | Submitted genomic | NC_000003.11:g.(?_ 173239853)_(173289 640_?)dup | GRCh37 (hg19) | NC_000003.11 | Chr3 | 173,239,853 | 173,289,640 | ||
| nssv15699430 | Submitted genomic | NC_000003.11:g.(?_ 173239853)_(173289 640_?)dup | GRCh37 (hg19) | NC_000003.11 | Chr3 | 173,239,853 | 173,289,640 |